Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5483 | 3' | -57.3 | NC_001798.1 | + | 47369 | 0.66 | 0.824221 |
Target: 5'- uCC-CCCGCaacccGCAGGGAGCCAc-- -3' miRNA: 3'- -GGuGGGUGguuc-UGUCCCUCGGUcuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 86070 | 0.66 | 0.824221 |
Target: 5'- aCC-CCCGCCGu--CuGGGAGUCGGGg -3' miRNA: 3'- -GGuGGGUGGUucuGuCCCUCGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 110046 | 0.66 | 0.827607 |
Target: 5'- gCCACCCACCAGuguaGCGGcccgucgcacaacgcGGAGCCccGGAu -3' miRNA: 3'- -GGUGGGUGGUUc---UGUC---------------CCUCGG--UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 224 | 0.66 | 0.832632 |
Target: 5'- gCGCCCGCCcccgcgcggcAGGACGGGGA-CUAGc- -3' miRNA: 3'- gGUGGGUGG----------UUCUGUCCCUcGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 9161 | 0.66 | 0.832632 |
Target: 5'- gCCGCCCgcGCCGggGGGCAGGGucucuGgCGGGu -3' miRNA: 3'- -GGUGGG--UGGU--UCUGUCCCu----CgGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 133841 | 0.66 | 0.821663 |
Target: 5'- gCUuCCCACCGAGgccuggcccaugauGCAGGGGGCgGuGAAc -3' miRNA: 3'- -GGuGGGUGGUUC--------------UGUCCCUCGgU-CUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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