miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5483 3' -57.3 NC_001798.1 + 59102 0.7 0.630918
Target:  5'- -aGCCCAgCGuGGCGGccuGGAGCCAGAGa -3'
miRNA:   3'- ggUGGGUgGUuCUGUC---CCUCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 59152 0.67 0.770373
Target:  5'- gCACCCACgcaggCGAGGCGGGGGcGCCc--- -3'
miRNA:   3'- gGUGGGUG-----GUUCUGUCCCU-CGGucuu -5'
5483 3' -57.3 NC_001798.1 + 60806 0.7 0.620687
Target:  5'- gCGCCCugCAGcacuaucuGGCAGGGcGGCCAGu- -3'
miRNA:   3'- gGUGGGugGUU--------CUGUCCC-UCGGUCuu -5'
5483 3' -57.3 NC_001798.1 + 66843 0.67 0.770373
Target:  5'- gCGCCCagGCCGGGGuuucCGGGGAgucGCCGGGg -3'
miRNA:   3'- gGUGGG--UGGUUCU----GUCCCU---CGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 68448 0.67 0.769433
Target:  5'- -gGCUCGCCGAGcaccGCGGGGAuugcgagcucgcgGCCGGGAc -3'
miRNA:   3'- ggUGGGUGGUUC----UGUCCCU-------------CGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 69095 0.68 0.731896
Target:  5'- cCCGCCCGgaccCCAGGGCGGaGGccuCCAGGAg -3'
miRNA:   3'- -GGUGGGU----GGUUCUGUC-CCuc-GGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 74501 0.73 0.453457
Target:  5'- aUCACCCACCcccugcggggcGAGAuCGGGGGGCuCGGGg -3'
miRNA:   3'- -GGUGGGUGG-----------UUCU-GUCCCUCG-GUCUu -5'
5483 3' -57.3 NC_001798.1 + 74640 0.67 0.788909
Target:  5'- aCCgGCCCcCCGAGGCcccccGGGGGGCCucGGGc -3'
miRNA:   3'- -GG-UGGGuGGUUCUG-----UCCCUCGG--UCUu -5'
5483 3' -57.3 NC_001798.1 + 79360 0.66 0.848901
Target:  5'- gCGCguaCGCCAGGGCcGGcGGCCAGAc -3'
miRNA:   3'- gGUGg--GUGGUUCUGuCCcUCGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 83251 0.71 0.55974
Target:  5'- -gACCCGCCGAGgacucACGGGGuGCUGGGGg -3'
miRNA:   3'- ggUGGGUGGUUC-----UGUCCCuCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 83731 0.72 0.510255
Target:  5'- aCCGCCCACC-AGAUAGcGGcccCCAGAAa -3'
miRNA:   3'- -GGUGGGUGGuUCUGUC-CCuc-GGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 84216 0.67 0.779707
Target:  5'- gCGCCCcCCGGGGCGccGuGGGGCCGGu- -3'
miRNA:   3'- gGUGGGuGGUUCUGU--C-CCUCGGUCuu -5'
5483 3' -57.3 NC_001798.1 + 85989 0.7 0.620687
Target:  5'- gCCG-CCGCCGGGGCgcuggcgcagggGGGuGAGCCGGAGa -3'
miRNA:   3'- -GGUgGGUGGUUCUG------------UCC-CUCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 86070 0.66 0.824221
Target:  5'- aCC-CCCGCCGu--CuGGGAGUCGGGg -3'
miRNA:   3'- -GGuGGGUGGUucuGuCCCUCGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 94564 0.67 0.770373
Target:  5'- uCCGaggCCGCCAAGGCGcGGGucGCCAGc- -3'
miRNA:   3'- -GGUg--GGUGGUUCUGU-CCCu-CGGUCuu -5'
5483 3' -57.3 NC_001798.1 + 97560 0.72 0.48145
Target:  5'- aCGCCCGCgAgcgaGGACGGGGAGCgCGGc- -3'
miRNA:   3'- gGUGGGUGgU----UCUGUCCCUCG-GUCuu -5'
5483 3' -57.3 NC_001798.1 + 97587 0.71 0.579925
Target:  5'- -nGCCCcgaGCCAGGggcGCAGGG-GCCGGAGa -3'
miRNA:   3'- ggUGGG---UGGUUC---UGUCCCuCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 104162 0.69 0.651374
Target:  5'- cCCGCCUgggcguCCAGGcACAGGGcGGCCAGc- -3'
miRNA:   3'- -GGUGGGu-----GGUUC-UGUCCC-UCGGUCuu -5'
5483 3' -57.3 NC_001798.1 + 110046 0.66 0.827607
Target:  5'- gCCACCCACCAGuguaGCGGcccgucgcacaacgcGGAGCCccGGAu -3'
miRNA:   3'- -GGUGGGUGGUUc---UGUC---------------CCUCGG--UCUu -5'
5483 3' -57.3 NC_001798.1 + 111571 0.72 0.510255
Target:  5'- aCACCCACCAcAGcucccugaGCGGGGGGCCcGGc -3'
miRNA:   3'- gGUGGGUGGU-UC--------UGUCCCUCGGuCUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.