miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5483 3' -57.3 NC_001798.1 + 69095 0.68 0.731896
Target:  5'- cCCGCCCGgaccCCAGGGCGGaGGccuCCAGGAg -3'
miRNA:   3'- -GGUGGGU----GGUUCUGUC-CCuc-GGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 68448 0.67 0.769433
Target:  5'- -gGCUCGCCGAGcaccGCGGGGAuugcgagcucgcgGCCGGGAc -3'
miRNA:   3'- ggUGGGUGGUUC----UGUCCCU-------------CGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 66843 0.67 0.770373
Target:  5'- gCGCCCagGCCGGGGuuucCGGGGAgucGCCGGGg -3'
miRNA:   3'- gGUGGG--UGGUUCU----GUCCCU---CGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 60806 0.7 0.620687
Target:  5'- gCGCCCugCAGcacuaucuGGCAGGGcGGCCAGu- -3'
miRNA:   3'- gGUGGGugGUU--------CUGUCCC-UCGGUCuu -5'
5483 3' -57.3 NC_001798.1 + 59152 0.67 0.770373
Target:  5'- gCACCCACgcaggCGAGGCGGGGGcGCCc--- -3'
miRNA:   3'- gGUGGGUG-----GUUCUGUCCCU-CGGucuu -5'
5483 3' -57.3 NC_001798.1 + 59102 0.7 0.630918
Target:  5'- -aGCCCAgCGuGGCGGccuGGAGCCAGAGa -3'
miRNA:   3'- ggUGGGUgGUuCUGUC---CCUCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 52273 0.67 0.806881
Target:  5'- uCCGCCCACCccgcguuugcGGACGuGGAGCaGGAGg -3'
miRNA:   3'- -GGUGGGUGGu---------UCUGUcCCUCGgUCUU- -5'
5483 3' -57.3 NC_001798.1 + 47369 0.66 0.824221
Target:  5'- uCC-CCCGCaacccGCAGGGAGCCAc-- -3'
miRNA:   3'- -GGuGGGUGguuc-UGUCCCUCGGUcuu -5'
5483 3' -57.3 NC_001798.1 + 44044 0.66 0.824221
Target:  5'- gCGCCCcCCAAG-CGcGGAGCCuGGAg -3'
miRNA:   3'- gGUGGGuGGUUCuGUcCCUCGGuCUU- -5'
5483 3' -57.3 NC_001798.1 + 42459 0.67 0.779707
Target:  5'- gCCAcCCCACgCAucguCAGGGAGCCGu-- -3'
miRNA:   3'- -GGU-GGGUG-GUucu-GUCCCUCGGUcuu -5'
5483 3' -57.3 NC_001798.1 + 34974 0.68 0.751344
Target:  5'- gCGgCCGCCGAGguGCGGGGgccccuccGGCCGGGg -3'
miRNA:   3'- gGUgGGUGGUUC--UGUCCC--------UCGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 33444 0.71 0.56981
Target:  5'- gCCGCaCCACCGgcgcgaAGcCAGGG-GCCAGGGa -3'
miRNA:   3'- -GGUG-GGUGGU------UCuGUCCCuCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 32883 0.73 0.444324
Target:  5'- aCCACCgGCCGAGGCGccucGGGGGCaggGGGAg -3'
miRNA:   3'- -GGUGGgUGGUUCUGU----CCCUCGg--UCUU- -5'
5483 3' -57.3 NC_001798.1 + 31967 0.71 0.549719
Target:  5'- cUCGCCCcCCAGGGgGuGGGGGCCAaGAGg -3'
miRNA:   3'- -GGUGGGuGGUUCUgU-CCCUCGGU-CUU- -5'
5483 3' -57.3 NC_001798.1 + 30471 0.66 0.824221
Target:  5'- aCGCCCGCCGAcgcGCAGGGAuCCuguGGGg -3'
miRNA:   3'- gGUGGGUGGUUc--UGUCCCUcGGu--CUU- -5'
5483 3' -57.3 NC_001798.1 + 30366 0.7 0.64115
Target:  5'- uCCACCU-CCGAGGCGGGcAGCaCGGAc -3'
miRNA:   3'- -GGUGGGuGGUUCUGUCCcUCG-GUCUu -5'
5483 3' -57.3 NC_001798.1 + 30128 0.71 0.58906
Target:  5'- cCCcCCCuuCCGaacaaaaagcagcGGGCGGGGGGCCGGGGu -3'
miRNA:   3'- -GGuGGGu-GGU-------------UCUGUCCCUCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 30003 0.69 0.702098
Target:  5'- gCCGCCCcCCGacccucuggggGGGCgAGGGAGgCAGGGa -3'
miRNA:   3'- -GGUGGGuGGU-----------UCUG-UCCCUCgGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 29391 0.68 0.760915
Target:  5'- aCCACUCaggGCCGcgccGGCGGGGcGCCGGGGg -3'
miRNA:   3'- -GGUGGG---UGGUu---CUGUCCCuCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 28978 0.66 0.856745
Target:  5'- uCCGCCCGCCc---CAGGGGGCg---- -3'
miRNA:   3'- -GGUGGGUGGuucuGUCCCUCGgucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.