Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5483 | 3' | -57.3 | NC_001798.1 | + | 28183 | 0.66 | 0.824221 |
Target: 5'- gCCcCCCgaGCgAGGGCGGGGGgaaggcGCCGGAGg -3' miRNA: 3'- -GGuGGG--UGgUUCUGUCCCU------CGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 27781 | 0.66 | 0.832632 |
Target: 5'- aCGCCaGCCGGGACGGGuGAguucGCUAGGc -3' miRNA: 3'- gGUGGgUGGUUCUGUCC-CU----CGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 27214 | 0.69 | 0.671769 |
Target: 5'- -aGCCC-CCGGGGCGGGGcGCgGGGGa -3' miRNA: 3'- ggUGGGuGGUUCUGUCCCuCGgUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 26568 | 0.66 | 0.848901 |
Target: 5'- gCCACgCCGCCGAGGC-GcGAGCCcguGGAc -3' miRNA: 3'- -GGUG-GGUGGUUCUGuCcCUCGG---UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 25233 | 0.66 | 0.824221 |
Target: 5'- cCgGCCCGCCGAGggccccgacccGCAGGGcGGCUGGc- -3' miRNA: 3'- -GgUGGGUGGUUC-----------UGUCCC-UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 19899 | 0.71 | 0.539755 |
Target: 5'- aCCACCgcggacaGCCAGGGCuGGGAGCCc--- -3' miRNA: 3'- -GGUGGg------UGGUUCUGuCCCUCGGucuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 19847 | 0.68 | 0.741668 |
Target: 5'- aCACgCGcCCGGGGCGGGuaGGCCAGAGc -3' miRNA: 3'- gGUGgGU-GGUUCUGUCCc-UCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 16218 | 0.7 | 0.610465 |
Target: 5'- aCGCgCCGCCugugggGGGGCGGuGGGGCCGGGg -3' miRNA: 3'- gGUG-GGUGG------UUCUGUC-CCUCGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 15395 | 0.66 | 0.856745 |
Target: 5'- gCGCCCACC-GGACccGGGGuugcgGGuCCGGGAg -3' miRNA: 3'- gGUGGGUGGuUCUG--UCCC-----UC-GGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 14112 | 0.66 | 0.852063 |
Target: 5'- gCACCCGacaCAcaaucggggcgauggGGugGGGGcaaGGCCAGAAa -3' miRNA: 3'- gGUGGGUg--GU---------------UCugUCCC---UCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 12489 | 0.66 | 0.856745 |
Target: 5'- gCCACCCucCCAcacgggcccagaGGuACAcGGGAGCgGGGAa -3' miRNA: 3'- -GGUGGGu-GGU------------UC-UGU-CCCUCGgUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 10462 | 0.66 | 0.848901 |
Target: 5'- -gGCCgACCAcGGACAGGGuGUaCAGAc -3' miRNA: 3'- ggUGGgUGGU-UCUGUCCCuCG-GUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 9161 | 0.66 | 0.832632 |
Target: 5'- gCCGCCCgcGCCGggGGGCAGGGucucuGgCGGGu -3' miRNA: 3'- -GGUGGG--UGGU--UCUGUCCCu----CgGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 9033 | 0.69 | 0.651374 |
Target: 5'- aCCGCCCcccgcaGCCAGcGCAcGGcGAGCCAGGu -3' miRNA: 3'- -GGUGGG------UGGUUcUGU-CC-CUCGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 7788 | 0.75 | 0.359109 |
Target: 5'- aCCGCCC-CCGcuGGC-GGGAGCCAGGGu -3' miRNA: 3'- -GGUGGGuGGUu-CUGuCCCUCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 7427 | 0.66 | 0.848901 |
Target: 5'- aCgACCC-CCAcgGGugccCAGGGAGCCuAGAc -3' miRNA: 3'- -GgUGGGuGGU--UCu---GUCCCUCGG-UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 7063 | 0.67 | 0.806881 |
Target: 5'- cCCACCC-CCAaaccccgguugGGGCGGGcAGCCgAGAc -3' miRNA: 3'- -GGUGGGuGGU-----------UCUGUCCcUCGG-UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 6191 | 0.67 | 0.815634 |
Target: 5'- uCCACCCACUGcagccuuaucgcAGGuacggugaccCGGGGGGCCGGc- -3' miRNA: 3'- -GGUGGGUGGU------------UCU----------GUCCCUCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 5973 | 0.7 | 0.619664 |
Target: 5'- gCCGCCgCACCAGGggacaccggcugcGCGGcGGAGaCCGGGAc -3' miRNA: 3'- -GGUGG-GUGGUUC-------------UGUC-CCUC-GGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 5903 | 0.72 | 0.529853 |
Target: 5'- uCCGCCCcgaggcggGCCcGGACGGGGGGCgGGc- -3' miRNA: 3'- -GGUGGG--------UGGuUCUGUCCCUCGgUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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