Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5483 | 3' | -57.3 | NC_001798.1 | + | 3886 | 0.75 | 0.33587 |
Target: 5'- gCGCCC-CgGGGGCGGGGGGCCGGc- -3' miRNA: 3'- gGUGGGuGgUUCUGUCCCUCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 2459 | 0.7 | 0.600259 |
Target: 5'- gCCGCCCugCGGGuCGGGGcccucggcgGGCCGGc- -3' miRNA: 3'- -GGUGGGugGUUCuGUCCC---------UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 2257 | 0.67 | 0.805997 |
Target: 5'- gCGCgCCGCCGggGGGCGGGGcggcgcagcgcgcGGCCAGc- -3' miRNA: 3'- gGUG-GGUGGU--UCUGUCCC-------------UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 2007 | 0.66 | 0.848901 |
Target: 5'- cCCGCCCaggcgGCCGuGGCGGGcccgcaGAGCCGGu- -3' miRNA: 3'- -GGUGGG-----UGGUuCUGUCC------CUCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 1969 | 0.69 | 0.671769 |
Target: 5'- gCGCCCagcGCCGAGACGucGGGGGCgCGGu- -3' miRNA: 3'- gGUGGG---UGGUUCUGU--CCCUCG-GUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 224 | 0.66 | 0.832632 |
Target: 5'- gCGCCCGCCcccgcgcggcAGGACGGGGA-CUAGc- -3' miRNA: 3'- gGUGGGUGG----------UUCUGUCCCUcGGUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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