Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5483 | 3' | -57.3 | NC_001798.1 | + | 2007 | 0.66 | 0.848901 |
Target: 5'- cCCGCCCaggcgGCCGuGGCGGGcccgcaGAGCCGGu- -3' miRNA: 3'- -GGUGGG-----UGGUuCUGUCC------CUCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 14112 | 0.66 | 0.852063 |
Target: 5'- gCACCCGacaCAcaaucggggcgauggGGugGGGGcaaGGCCAGAAa -3' miRNA: 3'- gGUGGGUg--GU---------------UCugUCCC---UCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 12489 | 0.66 | 0.856745 |
Target: 5'- gCCACCCucCCAcacgggcccagaGGuACAcGGGAGCgGGGAa -3' miRNA: 3'- -GGUGGGu-GGU------------UC-UGU-CCCUCGgUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 28978 | 0.66 | 0.856745 |
Target: 5'- uCCGCCCGCCc---CAGGGGGCg---- -3' miRNA: 3'- -GGUGGGUGGuucuGUCCCUCGgucuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 134598 | 0.66 | 0.856745 |
Target: 5'- uCCGCCgACCAGGAaggAGGGcGCCu--- -3' miRNA: 3'- -GGUGGgUGGUUCUg--UCCCuCGGucuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 224 | 0.66 | 0.832632 |
Target: 5'- gCGCCCGCCcccgcgcggcAGGACGGGGA-CUAGc- -3' miRNA: 3'- gGUGGGUGG----------UUCUGUCCCUcGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 110046 | 0.66 | 0.827607 |
Target: 5'- gCCACCCACCAGuguaGCGGcccgucgcacaacgcGGAGCCccGGAu -3' miRNA: 3'- -GGUGGGUGGUUc---UGUC---------------CCUCGG--UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 2257 | 0.67 | 0.805997 |
Target: 5'- gCGCgCCGCCGggGGGCGGGGcggcgcagcgcgcGGCCAGc- -3' miRNA: 3'- gGUG-GGUGGU--UCUGUCCC-------------UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 7063 | 0.67 | 0.806881 |
Target: 5'- cCCACCC-CCAaaccccgguugGGGCGGGcAGCCgAGAc -3' miRNA: 3'- -GGUGGGuGGU-----------UCUGUCCcUCGG-UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 52273 | 0.67 | 0.806881 |
Target: 5'- uCCGCCCACCccgcguuugcGGACGuGGAGCaGGAGg -3' miRNA: 3'- -GGUGGGUGGu---------UCUGUcCCUCGgUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 151903 | 0.67 | 0.814766 |
Target: 5'- cCCGCCCGCUgcuuuuuguucggAAGGgGGGGAGaaAGGGg -3' miRNA: 3'- -GGUGGGUGG-------------UUCUgUCCCUCggUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 6191 | 0.67 | 0.815634 |
Target: 5'- uCCACCCACUGcagccuuaucgcAGGuacggugaccCGGGGGGCCGGc- -3' miRNA: 3'- -GGUGGGUGGU------------UCU----------GUCCCUCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 132968 | 0.67 | 0.815634 |
Target: 5'- cCCAggCCGCCGAGACGGaGGAGgUGGGc -3' miRNA: 3'- -GGUg-GGUGGUUCUGUC-CCUCgGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 133841 | 0.66 | 0.821663 |
Target: 5'- gCUuCCCACCGAGgccuggcccaugauGCAGGGGGCgGuGAAc -3' miRNA: 3'- -GGuGGGUGGUUC--------------UGUCCCUCGgU-CUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 28183 | 0.66 | 0.824221 |
Target: 5'- gCCcCCCgaGCgAGGGCGGGGGgaaggcGCCGGAGg -3' miRNA: 3'- -GGuGGG--UGgUUCUGUCCCU------CGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 25233 | 0.66 | 0.824221 |
Target: 5'- cCgGCCCGCCGAGggccccgacccGCAGGGcGGCUGGc- -3' miRNA: 3'- -GgUGGGUGGUUC-----------UGUCCC-UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 30471 | 0.66 | 0.824221 |
Target: 5'- aCGCCCGCCGAcgcGCAGGGAuCCuguGGGg -3' miRNA: 3'- gGUGGGUGGUUc--UGUCCCUcGGu--CUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 44044 | 0.66 | 0.824221 |
Target: 5'- gCGCCCcCCAAG-CGcGGAGCCuGGAg -3' miRNA: 3'- gGUGGGuGGUUCuGUcCCUCGGuCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 47369 | 0.66 | 0.824221 |
Target: 5'- uCC-CCCGCaacccGCAGGGAGCCAc-- -3' miRNA: 3'- -GGuGGGUGguuc-UGUCCCUCGGUcuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 86070 | 0.66 | 0.824221 |
Target: 5'- aCC-CCCGCCGu--CuGGGAGUCGGGg -3' miRNA: 3'- -GGuGGGUGGUucuGuCCCUCGGUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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