miRNA display CGI


Results 81 - 100 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 81012 0.67 0.357743
Target:  5'- aGcCCCGGagCCC-CCCGGCCCCC-CUg -3'
miRNA:   3'- aC-GGGCUggGGGcGGGCUGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 85000 0.67 0.364268
Target:  5'- cGCgUG-CgCCCCGCUCGACCggccauggcgacgUCCGCCc -3'
miRNA:   3'- aCGgGCuG-GGGGCGGGCUGG-------------GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 148867 0.67 0.364998
Target:  5'- gUGCCCGcCCCCCcuccuccuccuCCCuuCCCCC-CCa -3'
miRNA:   3'- -ACGGGCuGGGGGc----------GGGcuGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 47656 0.67 0.364998
Target:  5'- cGCgaCGACUUCCGCCgCGGCgCUgGCCc -3'
miRNA:   3'- aCGg-GCUGGGGGCGG-GCUGgGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 133468 0.67 0.364998
Target:  5'- gUGgCCGACgCCCUGagcggCUGcCCCCCGCg -3'
miRNA:   3'- -ACgGGCUG-GGGGCg----GGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 143361 0.67 0.364998
Target:  5'- gGUCCGGCUCuCCGUCgagaGGCCCCaCGUg -3'
miRNA:   3'- aCGGGCUGGG-GGCGGg---CUGGGG-GCGg -5'
5484 5' -68.6 NC_001798.1 + 30205 0.67 0.364998
Target:  5'- cGCCUcacGCCCCgCGCCCucuaaauccCCCCCGUUg -3'
miRNA:   3'- aCGGGc--UGGGG-GCGGGcu-------GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 87045 0.67 0.364998
Target:  5'- cGCUCGcucuccguGCCCCUGgugaagaCGACCCCCGUg -3'
miRNA:   3'- aCGGGC--------UGGGGGCgg-----GCUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 129759 0.67 0.364998
Target:  5'- gGCCCGcCCuCCUGCCaCGcucacGCCCCCa-- -3'
miRNA:   3'- aCGGGCuGG-GGGCGG-GC-----UGGGGGcgg -5'
5484 5' -68.6 NC_001798.1 + 147399 0.67 0.363539
Target:  5'- cGCUCuccucacauuuCCCCC-CCCccCCCCCGCCg -3'
miRNA:   3'- aCGGGcu---------GGGGGcGGGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 131336 0.67 0.358464
Target:  5'- cGCCCGcGCCCCgggcgcgacgucggCGCCCGGCgcggccucgggggauCCCCuggggGCCc -3'
miRNA:   3'- aCGGGC-UGGGG--------------GCGGGCUG---------------GGGG-----CGG- -5'
5484 5' -68.6 NC_001798.1 + 118051 0.67 0.357743
Target:  5'- -aCCCGAUCaCCUGCgCCaGCgaCCCCGCCc -3'
miRNA:   3'- acGGGCUGG-GGGCG-GGcUG--GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 96378 0.67 0.357743
Target:  5'- gGCUCaGGCCgCCGCCUuucucaCCCCGCUg -3'
miRNA:   3'- aCGGG-CUGGgGGCGGGcug---GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 144528 0.67 0.357743
Target:  5'- gGCgCCGACCUCgCGUCgGGgagaCCCGCCg -3'
miRNA:   3'- aCG-GGCUGGGG-GCGGgCUgg--GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 24593 0.67 0.357743
Target:  5'- cGCgUGGCCgUggagUGCCUGGCCgCCUGCCg -3'
miRNA:   3'- aCGgGCUGGgG----GCGGGCUGG-GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 38034 0.67 0.357743
Target:  5'- gGCCCGugCaCCGCagCCGcCCCCCacGCUu -3'
miRNA:   3'- aCGGGCugGgGGCG--GGCuGGGGG--CGG- -5'
5484 5' -68.6 NC_001798.1 + 57584 0.67 0.357743
Target:  5'- uUGCUCGcguuCCCCCG-CgGGCCCaCCGUUa -3'
miRNA:   3'- -ACGGGCu---GGGGGCgGgCUGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 123587 0.67 0.357743
Target:  5'- gUGCCagguGGCCCuuCCGgacCCCGACCCCgagcgUGCCc -3'
miRNA:   3'- -ACGGg---CUGGG--GGC---GGGCUGGGG-----GCGG- -5'
5484 5' -68.6 NC_001798.1 + 146995 0.67 0.357743
Target:  5'- gGUCCGcCUCuuGCCUcgggGACCCCCgggcggGCCg -3'
miRNA:   3'- aCGGGCuGGGggCGGG----CUGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 16779 0.67 0.357743
Target:  5'- -aCCCGACCCgCCGCgUG-UCCCCGg- -3'
miRNA:   3'- acGGGCUGGG-GGCGgGCuGGGGGCgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.