miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 30205 0.67 0.364998
Target:  5'- cGCCUcacGCCCCgCGCCCucuaaauccCCCCCGUUg -3'
miRNA:   3'- aCGGGc--UGGGG-GCGGGcu-------GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 87045 0.67 0.364998
Target:  5'- cGCUCGcucuccguGCCCCUGgugaagaCGACCCCCGUg -3'
miRNA:   3'- aCGGGC--------UGGGGGCgg-----GCUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 129759 0.67 0.364998
Target:  5'- gGCCCGcCCuCCUGCCaCGcucacGCCCCCa-- -3'
miRNA:   3'- aCGGGCuGG-GGGCGG-GC-----UGGGGGcgg -5'
5484 5' -68.6 NC_001798.1 + 151517 0.67 0.364998
Target:  5'- cGCCC--CCCCCuCCCG-CUUCCGCUu -3'
miRNA:   3'- aCGGGcuGGGGGcGGGCuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 146995 0.67 0.357743
Target:  5'- gGUCCGcCUCuuGCCUcgggGACCCCCgggcggGCCg -3'
miRNA:   3'- aCGGGCuGGGggCGGG----CUGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 123587 0.67 0.357743
Target:  5'- gUGCCagguGGCCCuuCCGgacCCCGACCCCgagcgUGCCc -3'
miRNA:   3'- -ACGGg---CUGGG--GGC---GGGCUGGGG-----GCGG- -5'
5484 5' -68.6 NC_001798.1 + 57584 0.67 0.357743
Target:  5'- uUGCUCGcguuCCCCCG-CgGGCCCaCCGUUa -3'
miRNA:   3'- -ACGGGCu---GGGGGCgGgCUGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 1016 0.67 0.349171
Target:  5'- cGCCCGAuuccuuCCCCCucuccccaucucCCCccuCCCCCGCUc -3'
miRNA:   3'- aCGGGCU------GGGGGc-----------GGGcu-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 132939 0.67 0.35059
Target:  5'- cUGCCagGACCCCgacaCGUCCcugucGGCCCaggCCGCCg -3'
miRNA:   3'- -ACGGg-CUGGGG----GCGGG-----CUGGG---GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 93240 0.67 0.35059
Target:  5'- gGCCCcugcuugagGGCCaggaaaCGCCCGcgGCCCgCGCCg -3'
miRNA:   3'- aCGGG---------CUGGgg----GCGGGC--UGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 152380 0.67 0.35059
Target:  5'- cGCCgGGCCgCCGCuCCGuCgCUCGCa -3'
miRNA:   3'- aCGGgCUGGgGGCG-GGCuGgGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 80938 0.67 0.35059
Target:  5'- cGCCCucucgccgacgGGCCCCCguGCCUGGUCCUCGUg -3'
miRNA:   3'- aCGGG-----------CUGGGGG--CGGGCUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 90676 0.67 0.35059
Target:  5'- cGCCCccggcGACUCgCGCagGGCCgCCGCCa -3'
miRNA:   3'- aCGGG-----CUGGGgGCGggCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 148227 0.67 0.35059
Target:  5'- cGCgCGAgccCCCUCGcCCCGAugggagucUCCCCGCa -3'
miRNA:   3'- aCGgGCU---GGGGGC-GGGCU--------GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 89389 0.67 0.353439
Target:  5'- -uCCCGuCCCCCGgCCGcuCCCCUuccccccgaggcacgGCCg -3'
miRNA:   3'- acGGGCuGGGGGCgGGCu-GGGGG---------------CGG- -5'
5484 5' -68.6 NC_001798.1 + 81012 0.67 0.357743
Target:  5'- aGcCCCGGagCCC-CCCGGCCCCC-CUg -3'
miRNA:   3'- aC-GGGCUggGGGcGGGCUGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 96378 0.67 0.357743
Target:  5'- gGCUCaGGCCgCCGCCUuucucaCCCCGCUg -3'
miRNA:   3'- aCGGG-CUGGgGGCGGGcug---GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 144528 0.67 0.357743
Target:  5'- gGCgCCGACCUCgCGUCgGGgagaCCCGCCg -3'
miRNA:   3'- aCG-GGCUGGGG-GCGGgCUgg--GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 24593 0.67 0.357743
Target:  5'- cGCgUGGCCgUggagUGCCUGGCCgCCUGCCg -3'
miRNA:   3'- aCGgGCUGGgG----GCGGGCUGG-GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 38034 0.67 0.357743
Target:  5'- gGCCCGugCaCCGCagCCGcCCCCCacGCUu -3'
miRNA:   3'- aCGGGCugGgGGCG--GGCuGGGGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.