miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 118423 0.68 0.309829
Target:  5'- gUGCugCUGAgCCCUGCCCcGCCCCCucucCCa -3'
miRNA:   3'- -ACG--GGCUgGGGGCGGGcUGGGGGc---GG- -5'
5484 5' -68.6 NC_001798.1 + 92512 0.68 0.309829
Target:  5'- -aCCUGGCCCCCagcaCCCaGGCCCCCaaCCu -3'
miRNA:   3'- acGGGCUGGGGGc---GGG-CUGGGGGc-GG- -5'
5484 5' -68.6 NC_001798.1 + 73243 0.68 0.309829
Target:  5'- gGCCCGgggGCCCCCGgggaCCUggaGGCCCaagaUGCCg -3'
miRNA:   3'- aCGGGC---UGGGGGC----GGG---CUGGGg---GCGG- -5'
5484 5' -68.6 NC_001798.1 + 33251 0.68 0.309829
Target:  5'- gGCCCGGCCUCguUCUGGCuCCCUGUCu -3'
miRNA:   3'- aCGGGCUGGGGgcGGGCUG-GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 67299 0.68 0.307889
Target:  5'- gGCCCGAgguuCCgCCgagCGCCaCGACggcgguucggccauCCCCGCCg -3'
miRNA:   3'- aCGGGCU----GG-GG---GCGG-GCUG--------------GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 31422 0.68 0.305957
Target:  5'- cGCgCGGCCCaggaGCCCcccauagucaucagcGAcucuCCCCCGCCg -3'
miRNA:   3'- aCGgGCUGGGgg--CGGG---------------CU----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 132117 0.68 0.303397
Target:  5'- gGCCCGAggUCCUGCaggCGGCCCUgCGCCg -3'
miRNA:   3'- aCGGGCUg-GGGGCGg--GCUGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 81389 0.68 0.303397
Target:  5'- aGCCCGuCCCCCcucgcauguggGCCUGgAUCCaCgGCCu -3'
miRNA:   3'- aCGGGCuGGGGG-----------CGGGC-UGGG-GgCGG- -5'
5484 5' -68.6 NC_001798.1 + 75469 0.68 0.303397
Target:  5'- gGCCCGGCCgcggcCCUGCUgGACuucaCCCUGCg -3'
miRNA:   3'- aCGGGCUGG-----GGGCGGgCUG----GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 21695 0.68 0.309829
Target:  5'- aUGCCgCcGCUgCCGuCCCGGUCUCCGCCg -3'
miRNA:   3'- -ACGG-GcUGGgGGC-GGGCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 87002 0.68 0.309829
Target:  5'- cGCC--GCCCUCGCCCaGACgCCCuCCg -3'
miRNA:   3'- aCGGgcUGGGGGCGGG-CUGgGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 117833 0.68 0.316364
Target:  5'- gGCCUaucaccucaacgGGgCCUCGCCCGuccucaGCCCCUGCUu -3'
miRNA:   3'- aCGGG------------CUgGGGGCGGGC------UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 77013 0.68 0.316364
Target:  5'- -aCCCGACCCcggauaCCGCgacggcucuggCCGGCCugcauCCCGCCu -3'
miRNA:   3'- acGGGCUGGG------GGCG-----------GGCUGG-----GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 54301 0.68 0.316364
Target:  5'- cGCCCuGGCCCCgGaCCUGcuucggagcggaACCCCguCGCCc -3'
miRNA:   3'- aCGGG-CUGGGGgC-GGGC------------UGGGG--GCGG- -5'
5484 5' -68.6 NC_001798.1 + 42998 0.68 0.316364
Target:  5'- -aUCUGGCCCCCGa-CGGCCaggCCGCCc -3'
miRNA:   3'- acGGGCUGGGGGCggGCUGGg--GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 40798 0.68 0.316364
Target:  5'- cGCCCGACCaCCC-UuuGgagcGCCCCCuggggGCCg -3'
miRNA:   3'- aCGGGCUGG-GGGcGggC----UGGGGG-----CGG- -5'
5484 5' -68.6 NC_001798.1 + 128062 0.68 0.316364
Target:  5'- aGcCCCGGuCCCCCGgacCCCGACCCgaUGUg -3'
miRNA:   3'- aC-GGGCU-GGGGGC---GGGCUGGGg-GCGg -5'
5484 5' -68.6 NC_001798.1 + 46372 0.68 0.311779
Target:  5'- cGCCCGcguagaccagcgauCCCCCGCgCCGucuggccggcaggGCCaCCGCCc -3'
miRNA:   3'- aCGGGCu-------------GGGGGCG-GGC-------------UGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 89630 0.68 0.309829
Target:  5'- cUGCCCGACCagcagcgaguCCUGCacacaauacucgCCGAUcaCCCCGCg -3'
miRNA:   3'- -ACGGGCUGG----------GGGCG------------GGCUG--GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 66826 0.68 0.303397
Target:  5'- aGCCCGGCCCggUGCCgGcGCCCagGCCg -3'
miRNA:   3'- aCGGGCUGGGg-GCGGgC-UGGGggCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.