miRNA display CGI


Results 61 - 80 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 2103 0.77 0.072408
Target:  5'- gGCCCG-CCCCCGgCgCGGCCCgCgGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCgG-GCUGGG-GgCGG- -5'
5484 5' -68.6 NC_001798.1 + 80632 0.77 0.067292
Target:  5'- cGCCgCGACCCaCCGC---ACCCCCGCCg -3'
miRNA:   3'- aCGG-GCUGGG-GGCGggcUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 80180 0.77 0.070662
Target:  5'- cGCCUGACCCCgcauCCCGACgCCCGCa -3'
miRNA:   3'- aCGGGCUGGGGgc--GGGCUGgGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 75962 0.77 0.065665
Target:  5'- cGCCgGGCCCCUgaccgugauGCCCGuGCCCgCCGCCc -3'
miRNA:   3'- aCGGgCUGGGGG---------CGGGC-UGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 31577 0.77 0.068957
Target:  5'- cGCCgCGcGCCCCCGCgCGGCCgUCGCCc -3'
miRNA:   3'- aCGG-GC-UGGGGGCGgGCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25170 0.77 0.068957
Target:  5'- gGCCgCGcCCCCCGCCCcgccGACgCCgCCGCCg -3'
miRNA:   3'- aCGG-GCuGGGGGCGGG----CUG-GG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 150254 0.77 0.067292
Target:  5'- cGCCCGGCCCU--CCCGACCCgCGCg -3'
miRNA:   3'- aCGGGCUGGGGgcGGGCUGGGgGCGg -5'
5484 5' -68.6 NC_001798.1 + 34424 0.77 0.070662
Target:  5'- cGCCCGcCCCCCcCCCcucUCCCCGCCg -3'
miRNA:   3'- aCGGGCuGGGGGcGGGcu-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 82228 0.77 0.067292
Target:  5'- -cCCCGACCUCCGCCguccaGAccagcCCCCCGCCu -3'
miRNA:   3'- acGGGCUGGGGGCGGg----CU-----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 81450 0.77 0.070662
Target:  5'- cGCCggCGGCCCCaCGCCCaauccGGCCCCgGCCc -3'
miRNA:   3'- aCGG--GCUGGGG-GCGGG-----CUGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 150149 0.76 0.090092
Target:  5'- aGUCCGACCCgCGCCUcuuccgggggcgGGCCgCCGCCc -3'
miRNA:   3'- aCGGGCUGGGgGCGGG------------CUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 137898 0.76 0.083784
Target:  5'- gGCCCGgagaagauccGCCUCCGCCgggCGGCCCgCGCCu -3'
miRNA:   3'- aCGGGC----------UGGGGGCGG---GCUGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 115329 0.76 0.081776
Target:  5'- gUGCCCG-CCCCCGgccaCCCGGagCCCCGCg -3'
miRNA:   3'- -ACGGGCuGGGGGC----GGGCUg-GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 119712 0.76 0.087941
Target:  5'- uUGCUU--CCCCCGCCC-ACCCCCGCa -3'
miRNA:   3'- -ACGGGcuGGGGGCGGGcUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 32376 0.76 0.079814
Target:  5'- aGCCCGggGCCCgCGaCCCGGCgCCCgGCCu -3'
miRNA:   3'- aCGGGC--UGGGgGC-GGGCUG-GGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 499 0.76 0.090092
Target:  5'- cGCCCcgggggcuuCCCCCGCCCcucCCCCCGCg -3'
miRNA:   3'- aCGGGcu-------GGGGGCGGGcu-GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 23489 0.76 0.083784
Target:  5'- cGCCCGcGCCCCCGCCagcgccgcaGACCa-CGCCg -3'
miRNA:   3'- aCGGGC-UGGGGGCGGg--------CUGGggGCGG- -5'
5484 5' -68.6 NC_001798.1 + 127959 0.76 0.085838
Target:  5'- gGCCCGGCCCgCGucCCCGGCCCUCucugagGCCu -3'
miRNA:   3'- aCGGGCUGGGgGC--GGGCUGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 75029 0.76 0.085838
Target:  5'- cGCCCaagaagaaGGCCCCCGUcgccgCCGAggUCCCCGCCu -3'
miRNA:   3'- aCGGG--------CUGGGGGCG-----GGCU--GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 151865 0.76 0.087305
Target:  5'- cGCgCCGuguCCCCCGugucccucccucacCCCGGcCCCCCGCCc -3'
miRNA:   3'- aCG-GGCu--GGGGGC--------------GGGCU-GGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.