miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 7495 0.75 0.107635
Target:  5'- aGCCCGGuCCCCUacgccccccucggcaGCCCgGACCCCucauCGCCg -3'
miRNA:   3'- aCGGGCU-GGGGG---------------CGGG-CUGGGG----GCGG- -5'
5484 5' -68.6 NC_001798.1 + 146735 0.75 0.10162
Target:  5'- gUGCCCGgagauccauuaaGCCgCCggagaGCCCGAgCCCCGCCc -3'
miRNA:   3'- -ACGGGC------------UGGgGG-----CGGGCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 153357 0.75 0.096851
Target:  5'- gGUCCGAUgaCCGCCuCGGCCgCCGCCa -3'
miRNA:   3'- aCGGGCUGggGGCGG-GCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 104298 0.75 0.097787
Target:  5'- cGCCCGAguccaauccggacgcCCCCCGagcgaUGGCCUCCGCCg -3'
miRNA:   3'- aCGGGCU---------------GGGGGCgg---GCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 75788 0.75 0.092294
Target:  5'- -aCCCGAacaCCCUGUUCG-CCCCCGCCa -3'
miRNA:   3'- acGGGCUg--GGGGCGGGCuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 134795 0.75 0.094546
Target:  5'- cGCC--GCCCCCGgagcCCUGGCCCCCGUCu -3'
miRNA:   3'- aCGGgcUGGGGGC----GGGCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 54827 0.74 0.111829
Target:  5'- gGCgCC-ACCCCCGCcgCCGACaCCaCCGCCg -3'
miRNA:   3'- aCG-GGcUGGGGGCG--GGCUG-GG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 35745 0.74 0.10919
Target:  5'- cGCCCGGCCgcccacucCCCGCUCGGCCUCUccgGCUg -3'
miRNA:   3'- aCGGGCUGG--------GGGCGGGCUGGGGG---CGG- -5'
5484 5' -68.6 NC_001798.1 + 76279 0.74 0.111829
Target:  5'- cGCUCcccCCCCCGCCCc-CCCUCGCCa -3'
miRNA:   3'- aCGGGcu-GGGGGCGGGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 68947 0.74 0.120107
Target:  5'- aGCCgCG-CCCCgGCCCGcgUCCCGCCg -3'
miRNA:   3'- aCGG-GCuGGGGgCGGGCugGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 128296 0.74 0.10841
Target:  5'- cGCCUGAcgcgccgcgccCCCCCGUCCGccgccgaagccgucGcCCCCCGCCc -3'
miRNA:   3'- aCGGGCU-----------GGGGGCGGGC--------------U-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 58329 0.74 0.111829
Target:  5'- gGCCCG-CCgCCGCgUGGCCCCCGaCa -3'
miRNA:   3'- aCGGGCuGGgGGCGgGCUGGGGGCgG- -5'
5484 5' -68.6 NC_001798.1 + 54618 0.74 0.120107
Target:  5'- cGCCCccgcGCCuCCCGCCCcgcaACCCCgCGCCc -3'
miRNA:   3'- aCGGGc---UGG-GGGCGGGc---UGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 29026 0.74 0.111829
Target:  5'- gGCCCGGaCUCCGCCCcggcgaccGCCCCgCGCCg -3'
miRNA:   3'- aCGGGCUgGGGGCGGGc-------UGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 33755 0.74 0.111829
Target:  5'- cGCCCGcACaCCUGCCCGccACgCCCGCCc -3'
miRNA:   3'- aCGGGC-UGgGGGCGGGC--UGgGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 123807 0.74 0.10919
Target:  5'- cUGCCUccCCCCCGgaggaaaccCCCGACCCcgCCGCCg -3'
miRNA:   3'- -ACGGGcuGGGGGC---------GGGCUGGG--GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 81245 0.74 0.10919
Target:  5'- cUGcCCCGACCgCCGCCCGcgaCCCGCg -3'
miRNA:   3'- -AC-GGGCUGGgGGCGGGCuggGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 123397 0.74 0.120107
Target:  5'- cGCCaGGCCCCCcgggaGCCgCGG-CCCCGCCg -3'
miRNA:   3'- aCGGgCUGGGGG-----CGG-GCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 98306 0.74 0.120107
Target:  5'- cGCCCGACCUCCgaagGUCUGuACCgcuaCCCGCCg -3'
miRNA:   3'- aCGGGCUGGGGG----CGGGC-UGG----GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 81773 0.74 0.111829
Target:  5'- cGCCCcgGGCCUCCGCCCcccccgagggguGGCgUCCGCCg -3'
miRNA:   3'- aCGGG--CUGGGGGCGGG------------CUGgGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.