miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 21093 0.79 0.05395
Target:  5'- gGCCCGuCCCCCcguccccccgGCCCGucCCCCCGUCc -3'
miRNA:   3'- aCGGGCuGGGGG----------CGGGCu-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 120213 0.79 0.055295
Target:  5'- aGCUCGGgCCCCggGCCguUGGCCCCCGCCg -3'
miRNA:   3'- aCGGGCUgGGGG--CGG--GCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 82807 0.78 0.056256
Target:  5'- cGCUCGACCCCCuCCCaccggaaccgcauuGcCCCCCGCCg -3'
miRNA:   3'- aCGGGCUGGGGGcGGG--------------CuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 21314 0.78 0.056673
Target:  5'- -cCCCGGCCCCCcggcccCCCGGCCCCCcgGCCc -3'
miRNA:   3'- acGGGCUGGGGGc-----GGGCUGGGGG--CGG- -5'
5484 5' -68.6 NC_001798.1 + 151111 0.78 0.058084
Target:  5'- --nCCGACCCCCGCCCG-CCCucaCCGUCg -3'
miRNA:   3'- acgGGCUGGGGGCGGGCuGGG---GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 145938 0.78 0.058084
Target:  5'- aGCCgGGCCCCC-CCCcACCaCCCGCCc -3'
miRNA:   3'- aCGGgCUGGGGGcGGGcUGG-GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 137946 0.78 0.060561
Target:  5'- cGCCCGguccgccgcgcgcuGCUCCCGCUCcagcGCCCCCGCCu -3'
miRNA:   3'- aCGGGC--------------UGGGGGCGGGc---UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 24685 0.78 0.061009
Target:  5'- gGCCgGAgCCCgGCCCGccgcGCCCCCGCg -3'
miRNA:   3'- aCGGgCUgGGGgCGGGC----UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 82398 0.78 0.061009
Target:  5'- gUGCCCcagccGCCCCUGCCCcagccGCCCCUGCCc -3'
miRNA:   3'- -ACGGGc----UGGGGGCGGGc----UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 82443 0.78 0.062524
Target:  5'- cUGCCCcagccGCCCCUGCCCcagccGCCCCUGCCc -3'
miRNA:   3'- -ACGGGc----UGGGGGCGGGc----UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 82488 0.78 0.062524
Target:  5'- cUGCCCcagccGCCCCUGCCCcagccGCCCCUGCCc -3'
miRNA:   3'- -ACGGGc----UGGGGGCGGGc----UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 147202 0.78 0.062524
Target:  5'- cGCCCGGCggUCCgGCCCgGGCCCCCGgCg -3'
miRNA:   3'- aCGGGCUG--GGGgCGGG-CUGGGGGCgG- -5'
5484 5' -68.6 NC_001798.1 + 74803 0.78 0.064076
Target:  5'- cGCCCcGCCCCCGCa-GACaCCCGCCg -3'
miRNA:   3'- aCGGGcUGGGGGCGggCUGgGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 75962 0.77 0.065665
Target:  5'- cGCCgGGCCCCUgaccgugauGCCCGuGCCCgCCGCCc -3'
miRNA:   3'- aCGGgCUGGGGG---------CGGGC-UGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 80632 0.77 0.067292
Target:  5'- cGCCgCGACCCaCCGC---ACCCCCGCCg -3'
miRNA:   3'- aCGG-GCUGGG-GGCGggcUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 82228 0.77 0.067292
Target:  5'- -cCCCGACCUCCGCCguccaGAccagcCCCCCGCCu -3'
miRNA:   3'- acGGGCUGGGGGCGGg----CU-----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 150254 0.77 0.067292
Target:  5'- cGCCCGGCCCU--CCCGACCCgCGCg -3'
miRNA:   3'- aCGGGCUGGGGgcGGGCUGGGgGCGg -5'
5484 5' -68.6 NC_001798.1 + 31577 0.77 0.068957
Target:  5'- cGCCgCGcGCCCCCGCgCGGCCgUCGCCc -3'
miRNA:   3'- aCGG-GC-UGGGGGCGgGCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25170 0.77 0.068957
Target:  5'- gGCCgCGcCCCCCGCCCcgccGACgCCgCCGCCg -3'
miRNA:   3'- aCGG-GCuGGGGGCGGG----CUG-GG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 81450 0.77 0.070662
Target:  5'- cGCCggCGGCCCCaCGCCCaauccGGCCCCgGCCc -3'
miRNA:   3'- aCGG--GCUGGGG-GCGGG-----CUGGGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.