miRNA display CGI


Results 61 - 80 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 34424 0.77 0.070662
Target:  5'- cGCCCGcCCCCCcCCCcucUCCCCGCCg -3'
miRNA:   3'- aCGGGCuGGGGGcGGGcu-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 81450 0.77 0.070662
Target:  5'- cGCCggCGGCCCCaCGCCCaauccGGCCCCgGCCc -3'
miRNA:   3'- aCGG--GCUGGGG-GCGGG-----CUGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 81610 0.77 0.070662
Target:  5'- gUGCCCGugGCCCCuCGCgacgacccaCGGCCCUCGCCa -3'
miRNA:   3'- -ACGGGC--UGGGG-GCGg--------GCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 1320 0.77 0.072408
Target:  5'- cGCCCGcgcgcagaACUCCCGCCgCGGCCCgcgcagcuCCGCCg -3'
miRNA:   3'- aCGGGC--------UGGGGGCGG-GCUGGG--------GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 21177 0.77 0.072408
Target:  5'- gGCCCGucCCCCCGucccCCCGucCCCCCGUCc -3'
miRNA:   3'- aCGGGCu-GGGGGC----GGGCu-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 2103 0.77 0.072408
Target:  5'- gGCCCG-CCCCCGgCgCGGCCCgCgGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCgG-GCUGGG-GgCGG- -5'
5484 5' -68.6 NC_001798.1 + 81919 0.77 0.074195
Target:  5'- cGCCCGG-CCCCGCCuCGGCUcgcggggccuuuCCCGCCc -3'
miRNA:   3'- aCGGGCUgGGGGCGG-GCUGG------------GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 142533 0.77 0.074195
Target:  5'- cGCCCGACCacaCCC-CCCG-CCCCCGUa -3'
miRNA:   3'- aCGGGCUGG---GGGcGGGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 114834 0.77 0.074195
Target:  5'- gUGgCCGugCCCCGCCUGACgCaCGCCg -3'
miRNA:   3'- -ACgGGCugGGGGCGGGCUGgGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 146625 0.77 0.07584
Target:  5'- cGCCgcauuaGGCCCCCGCgggcauccggcggCCGGCCCCaCGCCc -3'
miRNA:   3'- aCGGg-----CUGGGGGCG-------------GGCUGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 25390 0.76 0.077897
Target:  5'- cGCCCGGCCCUCauGUUCGACCCgCGCg -3'
miRNA:   3'- aCGGGCUGGGGG--CGGGCUGGGgGCGg -5'
5484 5' -68.6 NC_001798.1 + 28505 0.76 0.077897
Target:  5'- cGCCCcuccGACCCCCugacGCCCcuccGACCCCCGUg -3'
miRNA:   3'- aCGGG----CUGGGGG----CGGG----CUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 32376 0.76 0.079814
Target:  5'- aGCCCGggGCCCgCGaCCCGGCgCCCgGCCu -3'
miRNA:   3'- aCGGGC--UGGGgGC-GGGCUG-GGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 34326 0.76 0.081578
Target:  5'- cGgCUGACCugCCUGCCCuuucuggGACCCCCGCCu -3'
miRNA:   3'- aCgGGCUGG--GGGCGGG-------CUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 115329 0.76 0.081776
Target:  5'- gUGCCCG-CCCCCGgccaCCCGGagCCCCGCg -3'
miRNA:   3'- -ACGGGCuGGGGGC----GGGCUg-GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 137898 0.76 0.083784
Target:  5'- gGCCCGgagaagauccGCCUCCGCCgggCGGCCCgCGCCu -3'
miRNA:   3'- aCGGGC----------UGGGGGCGG---GCUGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 23489 0.76 0.083784
Target:  5'- cGCCCGcGCCCCCGCCagcgccgcaGACCa-CGCCg -3'
miRNA:   3'- aCGGGC-UGGGGGCGGg--------CUGGggGCGG- -5'
5484 5' -68.6 NC_001798.1 + 127959 0.76 0.085838
Target:  5'- gGCCCGGCCCgCGucCCCGGCCCUCucugagGCCu -3'
miRNA:   3'- aCGGGCUGGGgGC--GGGCUGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 75029 0.76 0.085838
Target:  5'- cGCCCaagaagaaGGCCCCCGUcgccgCCGAggUCCCCGCCu -3'
miRNA:   3'- aCGGG--------CUGGGGGCG-----GGCU--GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 151865 0.76 0.087305
Target:  5'- cGCgCCGuguCCCCCGugucccucccucacCCCGGcCCCCCGCCc -3'
miRNA:   3'- aCG-GGCu--GGGGGC--------------GGGCU-GGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.