miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 119712 0.76 0.087941
Target:  5'- uUGCUU--CCCCCGCCC-ACCCCCGCa -3'
miRNA:   3'- -ACGGGcuGGGGGCGGGcUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 150149 0.76 0.090092
Target:  5'- aGUCCGACCCgCGCCUcuuccgggggcgGGCCgCCGCCc -3'
miRNA:   3'- aCGGGCUGGGgGCGGG------------CUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 499 0.76 0.090092
Target:  5'- cGCCCcgggggcuuCCCCCGCCCcucCCCCCGCg -3'
miRNA:   3'- aCGGGcu-------GGGGGCGGGcu-GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 75788 0.75 0.092294
Target:  5'- -aCCCGAacaCCCUGUUCG-CCCCCGCCa -3'
miRNA:   3'- acGGGCUg--GGGGCGGGCuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 51969 0.75 0.092294
Target:  5'- gGCCgCGcCCCCCcacCCCGGCCCCgaCGCCg -3'
miRNA:   3'- aCGG-GCuGGGGGc--GGGCUGGGG--GCGG- -5'
5484 5' -68.6 NC_001798.1 + 134795 0.75 0.094546
Target:  5'- cGCC--GCCCCCGgagcCCUGGCCCCCGUCu -3'
miRNA:   3'- aCGGgcUGGGGGC----GGGCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 27894 0.75 0.094546
Target:  5'- aGCCCaGCCgCCCGCCaUGuCCCgCCGCCg -3'
miRNA:   3'- aCGGGcUGG-GGGCGG-GCuGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 98746 0.75 0.096154
Target:  5'- gGCCCGAggcgaCCCCGCCCcccgacgccaacgcGACCgUCGCCg -3'
miRNA:   3'- aCGGGCUg----GGGGCGGG--------------CUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 153357 0.75 0.096851
Target:  5'- gGUCCGAUgaCCGCCuCGGCCgCCGCCa -3'
miRNA:   3'- aCGGGCUGggGGCGG-GCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 14808 0.75 0.096851
Target:  5'- cGCCUG-CgCCCCGCCCGGCCg-CGCCa -3'
miRNA:   3'- aCGGGCuG-GGGGCGGGCUGGggGCGG- -5'
5484 5' -68.6 NC_001798.1 + 4140 0.75 0.096851
Target:  5'- cGCCCccggGGCCCUCGCggGcACCCCCGCCu -3'
miRNA:   3'- aCGGG----CUGGGGGCGggC-UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 104298 0.75 0.097787
Target:  5'- cGCCCGAguccaauccggacgcCCCCCGagcgaUGGCCUCCGCCg -3'
miRNA:   3'- aCGGGCU---------------GGGGGCgg---GCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 21428 0.75 0.099208
Target:  5'- gGCCCGuCCCCCcgGCCCGuCCCCCc-- -3'
miRNA:   3'- aCGGGCuGGGGG--CGGGCuGGGGGcgg -5'
5484 5' -68.6 NC_001798.1 + 153410 0.75 0.099208
Target:  5'- gGCCCG-CUCgCgCGCCCagGACCCCCGUCg -3'
miRNA:   3'- aCGGGCuGGG-G-GCGGG--CUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 146735 0.75 0.10162
Target:  5'- gUGCCCGgagauccauuaaGCCgCCggagaGCCCGAgCCCCGCCc -3'
miRNA:   3'- -ACGGGC------------UGGgGG-----CGGGCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 119048 0.75 0.10162
Target:  5'- -cCCCGACCCCCggacGCCCGGggagcUCCCCGaCCu -3'
miRNA:   3'- acGGGCUGGGGG----CGGGCU-----GGGGGC-GG- -5'
5484 5' -68.6 NC_001798.1 + 5353 0.75 0.104087
Target:  5'- aUGCgCGGCCCCgC-CCCGACgCCCGCg -3'
miRNA:   3'- -ACGgGCUGGGG-GcGGGCUGgGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 145609 0.75 0.104087
Target:  5'- cGCCgCGACcccgaCCCCGCCCcACcgCCCCGCCc -3'
miRNA:   3'- aCGG-GCUG-----GGGGCGGGcUG--GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 70119 0.75 0.10661
Target:  5'- gGuCCCGGCgCCCGCCggcaUGACCCCC-CCg -3'
miRNA:   3'- aC-GGGCUGgGGGCGG----GCUGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 86206 0.75 0.10661
Target:  5'- aGCCCcaGCCCCaGCCCGACCuggaccugggCCCGCUg -3'
miRNA:   3'- aCGGGc-UGGGGgCGGGCUGG----------GGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.