Results 101 - 120 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5484 | 5' | -68.6 | NC_001798.1 | + | 70119 | 0.75 | 0.10661 |
Target: 5'- gGuCCCGGCgCCCGCCggcaUGACCCCC-CCg -3' miRNA: 3'- aC-GGGCUGgGGGCGG----GCUGGGGGcGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 28957 | 0.75 | 0.10661 |
Target: 5'- gGCCCGGCgccgCCCCGCCgcuCCgCCCGCCc -3' miRNA: 3'- aCGGGCUG----GGGGCGGgcuGG-GGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 128824 | 0.75 | 0.10661 |
Target: 5'- cGUUCGACCCCgCGgacCCCGgcGCCCCCGCg -3' miRNA: 3'- aCGGGCUGGGG-GC---GGGC--UGGGGGCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 55148 | 0.75 | 0.10661 |
Target: 5'- cGCCC-AUgCCCGCCCG-CCCCCGgaCCa -3' miRNA: 3'- aCGGGcUGgGGGCGGGCuGGGGGC--GG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 3526 | 0.75 | 0.10661 |
Target: 5'- cGCCaGGCCCCaGCCgaagCGGCCCgCCGCCa -3' miRNA: 3'- aCGGgCUGGGGgCGG----GCUGGG-GGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 7495 | 0.75 | 0.107635 |
Target: 5'- aGCCCGGuCCCCUacgccccccucggcaGCCCgGACCCCucauCGCCg -3' miRNA: 3'- aCGGGCU-GGGGG---------------CGGG-CUGGGG----GCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 128296 | 0.74 | 0.10841 |
Target: 5'- cGCCUGAcgcgccgcgccCCCCCGUCCGccgccgaagccgucGcCCCCCGCCc -3' miRNA: 3'- aCGGGCU-----------GGGGGCGGGC--------------U-GGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 81245 | 0.74 | 0.10919 |
Target: 5'- cUGcCCCGACCgCCGCCCGcgaCCCGCg -3' miRNA: 3'- -AC-GGGCUGGgGGCGGGCuggGGGCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 123807 | 0.74 | 0.10919 |
Target: 5'- cUGCCUccCCCCCGgaggaaaccCCCGACCCcgCCGCCg -3' miRNA: 3'- -ACGGGcuGGGGGC---------GGGCUGGG--GGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 35745 | 0.74 | 0.10919 |
Target: 5'- cGCCCGGCCgcccacucCCCGCUCGGCCUCUccgGCUg -3' miRNA: 3'- aCGGGCUGG--------GGGCGGGCUGGGGG---CGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 84427 | 0.74 | 0.10919 |
Target: 5'- gGCCCGACUCCC-C---ACCCCCGCCg -3' miRNA: 3'- aCGGGCUGGGGGcGggcUGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 33755 | 0.74 | 0.111829 |
Target: 5'- cGCCCGcACaCCUGCCCGccACgCCCGCCc -3' miRNA: 3'- aCGGGC-UGgGGGCGGGC--UGgGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 76279 | 0.74 | 0.111829 |
Target: 5'- cGCUCcccCCCCCGCCCc-CCCUCGCCa -3' miRNA: 3'- aCGGGcu-GGGGGCGGGcuGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 58329 | 0.74 | 0.111829 |
Target: 5'- gGCCCG-CCgCCGCgUGGCCCCCGaCa -3' miRNA: 3'- aCGGGCuGGgGGCGgGCUGGGGGCgG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 29026 | 0.74 | 0.111829 |
Target: 5'- gGCCCGGaCUCCGCCCcggcgaccGCCCCgCGCCg -3' miRNA: 3'- aCGGGCUgGGGGCGGGc-------UGGGG-GCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 81773 | 0.74 | 0.111829 |
Target: 5'- cGCCCcgGGCCUCCGCCCcccccgagggguGGCgUCCGCCg -3' miRNA: 3'- aCGGG--CUGGGGGCGGG------------CUGgGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 54827 | 0.74 | 0.111829 |
Target: 5'- gGCgCC-ACCCCCGCcgCCGACaCCaCCGCCg -3' miRNA: 3'- aCG-GGcUGGGGGCG--GGCUG-GG-GGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 129175 | 0.74 | 0.117286 |
Target: 5'- aGCCC-AUCUUCGCCa-ACCCCCGCCa -3' miRNA: 3'- aCGGGcUGGGGGCGGgcUGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 68947 | 0.74 | 0.120107 |
Target: 5'- aGCCgCG-CCCCgGCCCGcgUCCCGCCg -3' miRNA: 3'- aCGG-GCuGGGGgCGGGCugGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 82001 | 0.74 | 0.120107 |
Target: 5'- cGUCCccgggggcGACCgCCGCCgCGGCCgCCGCCa -3' miRNA: 3'- aCGGG--------CUGGgGGCGG-GCUGGgGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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