miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 54618 0.74 0.120107
Target:  5'- cGCCCccgcGCCuCCCGCCCcgcaACCCCgCGCCc -3'
miRNA:   3'- aCGGGc---UGG-GGGCGGGc---UGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 98306 0.74 0.120107
Target:  5'- cGCCCGACCUCCgaagGUCUGuACCgcuaCCCGCCg -3'
miRNA:   3'- aCGGGCUGGGGG----CGGGC-UGG----GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 123397 0.74 0.120107
Target:  5'- cGCCaGGCCCCCcgggaGCCgCGG-CCCCGCCg -3'
miRNA:   3'- aCGGgCUGGGGG-----CGG-GCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32575 0.74 0.122991
Target:  5'- gGCCgCGGCCCCCGCgUGgaGCCgCCGCa -3'
miRNA:   3'- aCGG-GCUGGGGGCGgGC--UGGgGGCGg -5'
5484 5' -68.6 NC_001798.1 + 57863 0.74 0.125048
Target:  5'- gGCCCGccuGCCCCCcugGCCUuauacccguccacgGcACCCCCGCCc -3'
miRNA:   3'- aCGGGC---UGGGGG---CGGG--------------C-UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 56359 0.74 0.125939
Target:  5'- -cUCCGAUCCCCGCCCccUCCaCCGCCc -3'
miRNA:   3'- acGGGCUGGGGGCGGGcuGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 150886 0.74 0.125939
Target:  5'- gGgUCG-CCCCCGCaCCGccGCCCCCGCg -3'
miRNA:   3'- aCgGGCuGGGGGCG-GGC--UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 79974 0.74 0.125939
Target:  5'- cGCCgCGuCCgCCGCCgGGCCCCCGg- -3'
miRNA:   3'- aCGG-GCuGGgGGCGGgCUGGGGGCgg -5'
5484 5' -68.6 NC_001798.1 + 134169 0.74 0.125939
Target:  5'- cGUCgCGGCCgCCCGCgCCGcgacgGCCCCgGCCg -3'
miRNA:   3'- aCGG-GCUGG-GGGCG-GGC-----UGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 35564 0.73 0.128042
Target:  5'- gGCCCGGCCCCggagcccgcggcgcUGCUCGGCUgCgGCCg -3'
miRNA:   3'- aCGGGCUGGGG--------------GCGGGCUGGgGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 32855 0.73 0.128953
Target:  5'- cUGCCCGAaggaagccgcCCCCCaCCgGACCaCCgGCCg -3'
miRNA:   3'- -ACGGGCU----------GGGGGcGGgCUGG-GGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 127853 0.73 0.128953
Target:  5'- gGCCCcg-CCCCGCCCca-CCCCGCCc -3'
miRNA:   3'- aCGGGcugGGGGCGGGcugGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 28429 0.73 0.128953
Target:  5'- cGCCCcuccGACCCCCugacGCCCcuccGACCCCCugacGCCc -3'
miRNA:   3'- aCGGG----CUGGGGG----CGGG----CUGGGGG----CGG- -5'
5484 5' -68.6 NC_001798.1 + 116614 0.73 0.132033
Target:  5'- gUGCCCGAgcgaUCCCGUgaCCGA-CCCCGCCc -3'
miRNA:   3'- -ACGGGCUg---GGGGCG--GGCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 150689 0.73 0.132033
Target:  5'- cGCCC-ACCCgCgCGCCUGcgcgcgcCCCCCGCCg -3'
miRNA:   3'- aCGGGcUGGG-G-GCGGGCu------GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 146217 0.73 0.134863
Target:  5'- -cUCCGGCCCuCCGCgagucCCGAcgcccccCCCCCGCCg -3'
miRNA:   3'- acGGGCUGGG-GGCG-----GGCU-------GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 15550 0.73 0.13518
Target:  5'- gUGCCCGGCCCCgGgCguuGCCgCCGCCg -3'
miRNA:   3'- -ACGGGCUGGGGgCgGgc-UGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 126410 0.73 0.13518
Target:  5'- cGCUCGuCCCCCGa--GGCCCCCgGCCc -3'
miRNA:   3'- aCGGGCuGGGGGCgggCUGGGGG-CGG- -5'
5484 5' -68.6 NC_001798.1 + 23293 0.73 0.13518
Target:  5'- cGCCgCGACCCCCGgCg---CCCCGCCg -3'
miRNA:   3'- aCGG-GCUGGGGGCgGgcugGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 9543 0.73 0.13518
Target:  5'- gGCCCGGCUuuuaaCCGCCCGccaggagcGCCUgCGCCa -3'
miRNA:   3'- aCGGGCUGGg----GGCGGGC--------UGGGgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.