miRNA display CGI


Results 141 - 160 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 29952 0.73 0.136459
Target:  5'- gGgCCGACCCCCgGCCCGcuuaagcggucggggGaCCCCCGUg -3'
miRNA:   3'- aCgGGCUGGGGG-CGGGC---------------U-GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 152124 0.73 0.138397
Target:  5'- cGCCCccgaGCCCaCCGCCCGcgaccACCCCCaacccgcaGCCg -3'
miRNA:   3'- aCGGGc---UGGG-GGCGGGC-----UGGGGG--------CGG- -5'
5484 5' -68.6 NC_001798.1 + 1207 0.73 0.138397
Target:  5'- aGCaCCG-UCCCCGCgCGGCCCgCgGCCg -3'
miRNA:   3'- aCG-GGCuGGGGGCGgGCUGGG-GgCGG- -5'
5484 5' -68.6 NC_001798.1 + 54563 0.73 0.141684
Target:  5'- gGuCCCGAgCCCUGCgCCGGCCggCCgGCCa -3'
miRNA:   3'- aC-GGGCUgGGGGCG-GGCUGG--GGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 79408 0.73 0.141684
Target:  5'- cGCCCGcGCCCCUGCUCGuugaucuucgcGCCCUcgaCGCCc -3'
miRNA:   3'- aCGGGC-UGGGGGCGGGC-----------UGGGG---GCGG- -5'
5484 5' -68.6 NC_001798.1 + 47939 0.73 0.141684
Target:  5'- gGCCuccgCGACCCCgGCgaCCGA-CCCCGCCc -3'
miRNA:   3'- aCGG----GCUGGGGgCG--GGCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 4003 0.73 0.145042
Target:  5'- cGCCCGGCCgugaagcggCCCGUggcgucgcggCCGGCCaCCGCCg -3'
miRNA:   3'- aCGGGCUGG---------GGGCG----------GGCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 111423 0.73 0.148472
Target:  5'- aGCgCGGCCCCgagaaaCGCCCGcggaGCCCCCaCCg -3'
miRNA:   3'- aCGgGCUGGGG------GCGGGC----UGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 25066 0.73 0.148472
Target:  5'- cGCaaGAgCCCCGcCCCGGCCagggcgCCGCCg -3'
miRNA:   3'- aCGggCUgGGGGC-GGGCUGGg-----GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 5724 0.73 0.148472
Target:  5'- aGCgCUGGCgCCCUGCCCGggGCCCgCGUCa -3'
miRNA:   3'- aCG-GGCUG-GGGGCGGGC--UGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 36116 0.73 0.148472
Target:  5'- gGCCCGGCUgcguCUCGCCgCGA-UCCCGCCg -3'
miRNA:   3'- aCGGGCUGG----GGGCGG-GCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 5862 0.73 0.148472
Target:  5'- aGCaCUGGCgCCCUGCCCGggGCCCgCGUCa -3'
miRNA:   3'- aCG-GGCUG-GGGGCGGGC--UGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 92164 0.72 0.151977
Target:  5'- uUGCCgGGCCCCCGUuccugccggucgCCGAUCUCCcgaaaGCCa -3'
miRNA:   3'- -ACGGgCUGGGGGCG------------GGCUGGGGG-----CGG- -5'
5484 5' -68.6 NC_001798.1 + 49070 0.72 0.151977
Target:  5'- aUGCCCucGCCgCCCauGCCCGuccCCCCCGCg -3'
miRNA:   3'- -ACGGGc-UGG-GGG--CGGGCu--GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 154545 0.72 0.151977
Target:  5'- cGCgCGGCuuuuuuCCCgCGCCCG-CCCCCGCg -3'
miRNA:   3'- aCGgGCUG------GGG-GCGGGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 23562 0.72 0.151977
Target:  5'- gUGCCCGcgaggGCCCCgggggcggCGcCCCGGCCgagCCCGCCc -3'
miRNA:   3'- -ACGGGC-----UGGGG--------GC-GGGCUGG---GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 207 0.72 0.151977
Target:  5'- cGCgCGGCuuuuuuCCCgCGCCCG-CCCCCGCg -3'
miRNA:   3'- aCGgGCUG------GGG-GCGGGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 24491 0.72 0.151977
Target:  5'- cGCCUGAgCgCCgCGCCCG-CCUCCGCg -3'
miRNA:   3'- aCGGGCUgG-GG-GCGGGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 86042 0.72 0.155556
Target:  5'- cGaCCUGAUCCUgcugcugcuCGCCgGcACCCCCGCCg -3'
miRNA:   3'- aC-GGGCUGGGG---------GCGGgC-UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 71801 0.72 0.155556
Target:  5'- gGaCCUGACCCCCaccacCCCGGCCaCgCCGCUg -3'
miRNA:   3'- aC-GGGCUGGGGGc----GGGCUGG-G-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.