miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 89389 0.67 0.353439
Target:  5'- -uCCCGuCCCCCGgCCGcuCCCCUuccccccgaggcacgGCCg -3'
miRNA:   3'- acGGGCuGGGGGCgGGCu-GGGGG---------------CGG- -5'
5484 5' -68.6 NC_001798.1 + 132939 0.67 0.35059
Target:  5'- cUGCCagGACCCCgacaCGUCCcugucGGCCCaggCCGCCg -3'
miRNA:   3'- -ACGGg-CUGGGG----GCGGG-----CUGGG---GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 93240 0.67 0.35059
Target:  5'- gGCCCcugcuugagGGCCaggaaaCGCCCGcgGCCCgCGCCg -3'
miRNA:   3'- aCGGG---------CUGGgg----GCGGGC--UGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 152380 0.67 0.35059
Target:  5'- cGCCgGGCCgCCGCuCCGuCgCUCGCa -3'
miRNA:   3'- aCGGgCUGGgGGCG-GGCuGgGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 80938 0.67 0.35059
Target:  5'- cGCCCucucgccgacgGGCCCCCguGCCUGGUCCUCGUg -3'
miRNA:   3'- aCGGG-----------CUGGGGG--CGGGCUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 90676 0.67 0.35059
Target:  5'- cGCCCccggcGACUCgCGCagGGCCgCCGCCa -3'
miRNA:   3'- aCGGG-----CUGGGgGCGggCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 148227 0.67 0.35059
Target:  5'- cGCgCGAgccCCCUCGcCCCGAugggagucUCCCCGCa -3'
miRNA:   3'- aCGgGCU---GGGGGC-GGGCU--------GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 1016 0.67 0.349171
Target:  5'- cGCCCGAuuccuuCCCCCucuccccaucucCCCccuCCCCCGCUc -3'
miRNA:   3'- aCGGGCU------GGGGGc-----------GGGcu-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 70856 0.67 0.343539
Target:  5'- aGCCauCGACgaCgCCGCCCuGACCCCCcucacgcggGCCc -3'
miRNA:   3'- aCGG--GCUGg-G-GGCGGG-CUGGGGG---------CGG- -5'
5484 5' -68.6 NC_001798.1 + 96531 0.67 0.343539
Target:  5'- gGCCCGA-CCCUGUCCGuACCaCCaGCa -3'
miRNA:   3'- aCGGGCUgGGGGCGGGC-UGG-GGgCGg -5'
5484 5' -68.6 NC_001798.1 + 35463 0.67 0.342141
Target:  5'- gGCCCGucugcugGCCCgCgGCCCGucugcugGCCCgCgGCCa -3'
miRNA:   3'- aCGGGC-------UGGG-GgCGGGC-------UGGG-GgCGG- -5'
5484 5' -68.6 NC_001798.1 + 62828 0.67 0.341443
Target:  5'- gGCCCacgcGCCCCCGCCCGcguuuuacaaggacGUCCUgGCUa -3'
miRNA:   3'- aCGGGc---UGGGGGCGGGC--------------UGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 26463 0.67 0.341443
Target:  5'- gGCCCG-CCCCCGCagauacgcugggcgUCGGCCgCgGgCCg -3'
miRNA:   3'- aCGGGCuGGGGGCG--------------GGCUGGgGgC-GG- -5'
5484 5' -68.6 NC_001798.1 + 19171 0.67 0.33659
Target:  5'- -aCCgUGGCCCCUGCCCGAUCgguuUuuGCCc -3'
miRNA:   3'- acGG-GCUGGGGGCGGGCUGG----GggCGG- -5'
5484 5' -68.6 NC_001798.1 + 44595 0.67 0.33659
Target:  5'- cGCCCGGCUCCC-CUCGAaCCUCuCCu -3'
miRNA:   3'- aCGGGCUGGGGGcGGGCUgGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 45033 0.67 0.33659
Target:  5'- uUGCCCG-CCCCCaucacGCUCGACga-CGCCc -3'
miRNA:   3'- -ACGGGCuGGGGG-----CGGGCUGgggGCGG- -5'
5484 5' -68.6 NC_001798.1 + 78160 0.67 0.33659
Target:  5'- gUGCCCGGCCUgCGCCgGua-CgUGCCg -3'
miRNA:   3'- -ACGGGCUGGGgGCGGgCuggGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 132153 0.67 0.33659
Target:  5'- gGCCgGcgggcggggcGCCCCC-CCCGgacGCCCCC-CCg -3'
miRNA:   3'- aCGGgC----------UGGGGGcGGGC---UGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 147874 0.67 0.33659
Target:  5'- -aCCC-ACCCCCGuuucCCCccCCCCCGUCg -3'
miRNA:   3'- acGGGcUGGGGGC----GGGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 146179 0.67 0.33659
Target:  5'- aGuCCCGAUCCuCCuCCUGcauCCCCuCGCCu -3'
miRNA:   3'- aC-GGGCUGGG-GGcGGGCu--GGGG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.