miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 147874 0.67 0.33659
Target:  5'- -aCCC-ACCCCCGuuucCCCccCCCCCGUCg -3'
miRNA:   3'- acGGGcUGGGGGC----GGGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 62594 0.67 0.33659
Target:  5'- cGCCCcggaGGCCCUggacuggcUGCCCGAUCCgaugaccaUCGCCg -3'
miRNA:   3'- aCGGG----CUGGGG--------GCGGGCUGGG--------GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 49312 0.67 0.335901
Target:  5'- cGCCCacggcGACguggcguuccccaCCCUGCCCG-CCaCCCGCg -3'
miRNA:   3'- aCGGG-----CUG-------------GGGGCGGGCuGG-GGGCGg -5'
5484 5' -68.6 NC_001798.1 + 133230 0.67 0.329745
Target:  5'- gGCCCuACaCCCCaCCCuaaacgucGCCCCCGUCu -3'
miRNA:   3'- aCGGGcUG-GGGGcGGGc-------UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 531 0.67 0.329745
Target:  5'- cGCCCGcgGCCCCgaGCUCGcagcaGCCCCUcCCu -3'
miRNA:   3'- aCGGGC--UGGGGg-CGGGC-----UGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 81671 0.67 0.329745
Target:  5'- aUGCCgCGcuuCCUCC-CCCGGCCUuuuccggcucugCCGCCg -3'
miRNA:   3'- -ACGG-GCu--GGGGGcGGGCUGGG------------GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 127999 0.67 0.329745
Target:  5'- gGCCCGccaACCCCCGacauuCCC--CUCUCGCCg -3'
miRNA:   3'- aCGGGC---UGGGGGC-----GGGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 134517 0.67 0.329745
Target:  5'- gUGCgCGuCCUCCGCCUcGCUCgCCGUCa -3'
miRNA:   3'- -ACGgGCuGGGGGCGGGcUGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 69068 0.67 0.329745
Target:  5'- gGCCCGcgcgcgcgcaGCCgcucucggCCCGCCCgGACCCCagggcggagGCCu -3'
miRNA:   3'- aCGGGC----------UGG--------GGGCGGG-CUGGGGg--------CGG- -5'
5484 5' -68.6 NC_001798.1 + 82065 0.67 0.329745
Target:  5'- -cCCCGggGCCCCgCGgCCGGCCCaCC-CCg -3'
miRNA:   3'- acGGGC--UGGGG-GCgGGCUGGG-GGcGG- -5'
5484 5' -68.6 NC_001798.1 + 1499 0.67 0.329066
Target:  5'- cGCCCGcGCCCgaggcggCgGCCCGGCCguCCagCGCCg -3'
miRNA:   3'- aCGGGC-UGGG-------GgCGGGCUGG--GG--GCGG- -5'
5484 5' -68.6 NC_001798.1 + 19972 0.67 0.325688
Target:  5'- aGCCgCGAUagCCCCGCCgGACgcggauuccggguucUCCCgGCCg -3'
miRNA:   3'- aCGG-GCUG--GGGGCGGgCUG---------------GGGG-CGG- -5'
5484 5' -68.6 NC_001798.1 + 86894 0.67 0.323003
Target:  5'- cGCCgGgaACCCCggcguggagCGCCgGGCCuCCCGCa -3'
miRNA:   3'- aCGGgC--UGGGG---------GCGGgCUGG-GGGCGg -5'
5484 5' -68.6 NC_001798.1 + 81301 0.67 0.323003
Target:  5'- gGuCCCGAggacCCCgCUGCCC--CCCCCGCa -3'
miRNA:   3'- aC-GGGCU----GGG-GGCGGGcuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 109925 0.67 0.323003
Target:  5'- gGCCaUGGCCaCCCGaUCCGACaUCCCGgCg -3'
miRNA:   3'- aCGG-GCUGG-GGGC-GGGCUG-GGGGCgG- -5'
5484 5' -68.6 NC_001798.1 + 86092 0.67 0.323003
Target:  5'- gGcCCCGGCUgcgCgCCGCCgCgGACgCCCGCCg -3'
miRNA:   3'- aC-GGGCUGG---G-GGCGG-G-CUGgGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 139315 0.67 0.323003
Target:  5'- cGCCCcGCgUCCGCaucgCCGGCgCCCGCg -3'
miRNA:   3'- aCGGGcUGgGGGCG----GGCUGgGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 19364 0.67 0.322335
Target:  5'- cGCCCcGCaucauCCCGCCCGcauccggcgacccACCCCaCGCa -3'
miRNA:   3'- aCGGGcUGg----GGGCGGGC-------------UGGGG-GCGg -5'
5484 5' -68.6 NC_001798.1 + 47388 0.67 0.322335
Target:  5'- aGCCacucccgCGGCCCCCGUggguuacgcaGGCCCUCGCUg -3'
miRNA:   3'- aCGG-------GCUGGGGGCGgg--------CUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 70192 0.67 0.321667
Target:  5'- aGCCUGACCaaccuccgccggCCGCCCu-CCCCCucgagcgaGCCg -3'
miRNA:   3'- aCGGGCUGGg-----------GGCGGGcuGGGGG--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.