Results 121 - 140 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5484 | 5' | -68.6 | NC_001798.1 | + | 128062 | 0.68 | 0.316364 |
Target: 5'- aGcCCCGGuCCCCCGgacCCCGACCCgaUGUg -3' miRNA: 3'- aC-GGGCU-GGGGGC---GGGCUGGGg-GCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 40798 | 0.68 | 0.316364 |
Target: 5'- cGCCCGACCaCCC-UuuGgagcGCCCCCuggggGCCg -3' miRNA: 3'- aCGGGCUGG-GGGcGggC----UGGGGG-----CGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 42998 | 0.68 | 0.316364 |
Target: 5'- -aUCUGGCCCCCGa-CGGCCaggCCGCCc -3' miRNA: 3'- acGGGCUGGGGGCggGCUGGg--GGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 54301 | 0.68 | 0.316364 |
Target: 5'- cGCCCuGGCCCCgGaCCUGcuucggagcggaACCCCguCGCCc -3' miRNA: 3'- aCGGG-CUGGGGgC-GGGC------------UGGGG--GCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 77013 | 0.68 | 0.316364 |
Target: 5'- -aCCCGACCCcggauaCCGCgacggcucuggCCGGCCugcauCCCGCCu -3' miRNA: 3'- acGGGCUGGG------GGCG-----------GGCUGG-----GGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 117833 | 0.68 | 0.316364 |
Target: 5'- gGCCUaucaccucaacgGGgCCUCGCCCGuccucaGCCCCUGCUu -3' miRNA: 3'- aCGGG------------CUgGGGGCGGGC------UGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 31123 | 0.68 | 0.316364 |
Target: 5'- cGCCCGcCCCCCGaagagCG-CCCCgGCg -3' miRNA: 3'- aCGGGCuGGGGGCgg---GCuGGGGgCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 46372 | 0.68 | 0.311779 |
Target: 5'- cGCCCGcguagaccagcgauCCCCCGCgCCGucuggccggcaggGCCaCCGCCc -3' miRNA: 3'- aCGGGCu-------------GGGGGCG-GGC-------------UGGgGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 33251 | 0.68 | 0.309829 |
Target: 5'- gGCCCGGCCUCguUCUGGCuCCCUGUCu -3' miRNA: 3'- aCGGGCUGGGGgcGGGCUG-GGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 73243 | 0.68 | 0.309829 |
Target: 5'- gGCCCGgggGCCCCCGgggaCCUggaGGCCCaagaUGCCg -3' miRNA: 3'- aCGGGC---UGGGGGC----GGG---CUGGGg---GCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 92512 | 0.68 | 0.309829 |
Target: 5'- -aCCUGGCCCCCagcaCCCaGGCCCCCaaCCu -3' miRNA: 3'- acGGGCUGGGGGc---GGG-CUGGGGGc-GG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 118423 | 0.68 | 0.309829 |
Target: 5'- gUGCugCUGAgCCCUGCCCcGCCCCCucucCCa -3' miRNA: 3'- -ACG--GGCUgGGGGCGGGcUGGGGGc---GG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 21695 | 0.68 | 0.309829 |
Target: 5'- aUGCCgCcGCUgCCGuCCCGGUCUCCGCCg -3' miRNA: 3'- -ACGG-GcUGGgGGC-GGGCUGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 87002 | 0.68 | 0.309829 |
Target: 5'- cGCC--GCCCUCGCCCaGACgCCCuCCg -3' miRNA: 3'- aCGGgcUGGGGGCGGG-CUGgGGGcGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 89630 | 0.68 | 0.309829 |
Target: 5'- cUGCCCGACCagcagcgaguCCUGCacacaauacucgCCGAUcaCCCCGCg -3' miRNA: 3'- -ACGGGCUGG----------GGGCG------------GGCUG--GGGGCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 67299 | 0.68 | 0.307889 |
Target: 5'- gGCCCGAgguuCCgCCgagCGCCaCGACggcgguucggccauCCCCGCCg -3' miRNA: 3'- aCGGGCU----GG-GG---GCGG-GCUG--------------GGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 31422 | 0.68 | 0.305957 |
Target: 5'- cGCgCGGCCCaggaGCCCcccauagucaucagcGAcucuCCCCCGCCg -3' miRNA: 3'- aCGgGCUGGGgg--CGGG---------------CU----GGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 81389 | 0.68 | 0.303397 |
Target: 5'- aGCCCGuCCCCCcucgcauguggGCCUGgAUCCaCgGCCu -3' miRNA: 3'- aCGGGCuGGGGG-----------CGGGC-UGGG-GgCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 75469 | 0.68 | 0.303397 |
Target: 5'- gGCCCGGCCgcggcCCUGCUgGACuucaCCCUGCg -3' miRNA: 3'- aCGGGCUGG-----GGGCGGgCUG----GGGGCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 66826 | 0.68 | 0.303397 |
Target: 5'- aGCCCGGCCCggUGCCgGcGCCCagGCCg -3' miRNA: 3'- aCGGGCUGGGg-GCGGgC-UGGGggCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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