miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 24384 0.71 0.200216
Target:  5'- aGCCCG-CCgCCGCCgCcGCCCCguUGCCg -3'
miRNA:   3'- aCGGGCuGGgGGCGG-GcUGGGG--GCGG- -5'
5484 5' -68.6 NC_001798.1 + 24491 0.72 0.151977
Target:  5'- cGCCUGAgCgCCgCGCCCG-CCUCCGCg -3'
miRNA:   3'- aCGGGCUgG-GG-GCGGGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 24593 0.67 0.357743
Target:  5'- cGCgUGGCCgUggagUGCCUGGCCgCCUGCCg -3'
miRNA:   3'- aCGgGCUGGgG----GCGGGCUGG-GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 24685 0.78 0.061009
Target:  5'- gGCCgGAgCCCgGCCCGccgcGCCCCCGCg -3'
miRNA:   3'- aCGGgCUgGGGgCGGGC----UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 24728 0.7 0.204788
Target:  5'- gGCgCGGCcgCCCCGCCgcacgcCGACgcgCCCCGCCu -3'
miRNA:   3'- aCGgGCUG--GGGGCGG------GCUG---GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 24905 0.7 0.213723
Target:  5'- gGCCCGgcgcugccgcggaGCCCgCGCCUgcuGAgCUCCGCCg -3'
miRNA:   3'- aCGGGC-------------UGGGgGCGGG---CUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25011 0.7 0.214202
Target:  5'- cGCCgCGGCCgaCUCGCUCGccGCgCCCGCCu -3'
miRNA:   3'- aCGG-GCUGG--GGGCGGGC--UGgGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25066 0.73 0.148472
Target:  5'- cGCaaGAgCCCCGcCCCGGCCagggcgCCGCCg -3'
miRNA:   3'- aCGggCUgGGGGC-GGGCUGGg-----GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25104 0.69 0.25011
Target:  5'- cGCCCcgcGCCCCCcgaagaagagccGCgCGGacgcCCCCCGCCc -3'
miRNA:   3'- aCGGGc--UGGGGG------------CGgGCU----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25170 0.77 0.068957
Target:  5'- gGCCgCGcCCCCCGCCCcgccGACgCCgCCGCCg -3'
miRNA:   3'- aCGG-GCuGGGGGCGGG----CUG-GG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25221 0.7 0.225485
Target:  5'- gGCgCUGACCCgCCGgcccgccgagggcCCCGACCCgcagggcggcuggcgCCGCCa -3'
miRNA:   3'- aCG-GGCUGGG-GGC-------------GGGCUGGG---------------GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25304 0.68 0.297068
Target:  5'- cGCCCucGGCCgCCGCCCuggaGGCCUacugCGCCc -3'
miRNA:   3'- aCGGG--CUGGgGGCGGG----CUGGGg---GCGG- -5'
5484 5' -68.6 NC_001798.1 + 25355 0.71 0.200216
Target:  5'- aGCUCacgGACCaCCCGCUCuuCCCCgCGCCg -3'
miRNA:   3'- aCGGG---CUGG-GGGCGGGcuGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 25390 0.76 0.077897
Target:  5'- cGCCCGGCCCUCauGUUCGACCCgCGCg -3'
miRNA:   3'- aCGGGCUGGGGG--CGGGCUGGGgGCGg -5'
5484 5' -68.6 NC_001798.1 + 25446 0.71 0.187032
Target:  5'- cGCCCcGCCCCCcggcgGCgCG-CCCgCCGCCu -3'
miRNA:   3'- aCGGGcUGGGGG-----CGgGCuGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 25825 0.66 0.418558
Target:  5'- cUGgCCGGCgCCUGC--GACCgCCGCCu -3'
miRNA:   3'- -ACgGGCUGgGGGCGggCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 26058 0.69 0.249564
Target:  5'- cGCCUGuACCCCgaCGCgCCGccgcugcGCCUCUGCCg -3'
miRNA:   3'- aCGGGC-UGGGG--GCG-GGC-------UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 26175 0.69 0.266961
Target:  5'- cGCgCCGugCUCCcggcgcuggacgGCCgGGCCgCCGCCu -3'
miRNA:   3'- aCG-GGCugGGGG------------CGGgCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 26413 0.71 0.19134
Target:  5'- aGCCCGacggcgacgcGCCCCCGCUgGugCUgCGCg -3'
miRNA:   3'- aCGGGC----------UGGGGGCGGgCugGGgGCGg -5'
5484 5' -68.6 NC_001798.1 + 26463 0.67 0.341443
Target:  5'- gGCCCG-CCCCCGCagauacgcugggcgUCGGCCgCgGgCCg -3'
miRNA:   3'- aCGGGCuGGGGGCG--------------GGCUGGgGgC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.