miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 27623 0.81 0.033691
Target:  5'- cUGCCCuGCCgCCCGCCCG-CCgCCGCCg -3'
miRNA:   3'- -ACGGGcUGG-GGGCGGGCuGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 27649 0.68 0.302759
Target:  5'- cGCCCGccuucgcGCCCCCcCCCaaaaaacACCCCCcCCg -3'
miRNA:   3'- aCGGGC-------UGGGGGcGGGc------UGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 27894 0.75 0.094546
Target:  5'- aGCCCaGCCgCCCGCCaUGuCCCgCCGCCg -3'
miRNA:   3'- aCGGGcUGG-GGGCGG-GCuGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 27940 0.66 0.395019
Target:  5'- gGuCCCGGCgCCgGCCgCG-CCCCgGCg -3'
miRNA:   3'- aC-GGGCUGgGGgCGG-GCuGGGGgCGg -5'
5484 5' -68.6 NC_001798.1 + 27975 0.66 0.39425
Target:  5'- gUGCCgCG-CCCCgGCgcuccagCCGugCCgCGCCc -3'
miRNA:   3'- -ACGG-GCuGGGGgCG-------GGCugGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 28231 0.82 0.032053
Target:  5'- cGCCUG-CCgCCGCCUGcCCCCCGCCg -3'
miRNA:   3'- aCGGGCuGGgGGCGGGCuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 28341 0.69 0.25011
Target:  5'- cGCCUGAgCCUgCGCCggcggCGGcCCCCCGCg -3'
miRNA:   3'- aCGGGCU-GGGgGCGG-----GCU-GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 28429 0.73 0.128953
Target:  5'- cGCCCcuccGACCCCCugacGCCCcuccGACCCCCugacGCCc -3'
miRNA:   3'- aCGGG----CUGGGGG----CGGG----CUGGGGG----CGG- -5'
5484 5' -68.6 NC_001798.1 + 28472 0.69 0.255628
Target:  5'- -cUCCGACCCCCugacGCCCcuccGACCCCCu-- -3'
miRNA:   3'- acGGGCUGGGGG----CGGG----CUGGGGGcgg -5'
5484 5' -68.6 NC_001798.1 + 28505 0.76 0.077897
Target:  5'- cGCCCcuccGACCCCCugacGCCCcuccGACCCCCGUg -3'
miRNA:   3'- aCGGG----CUGGGGG----CGGG----CUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 28722 0.7 0.234146
Target:  5'- gGCCCGAgCUCgGgCCCGAgCCCgaGCCc -3'
miRNA:   3'- aCGGGCUgGGGgC-GGGCUgGGGg-CGG- -5'
5484 5' -68.6 NC_001798.1 + 28957 0.75 0.10661
Target:  5'- gGCCCGGCgccgCCCCGCCgcuCCgCCCGCCc -3'
miRNA:   3'- aCGGGCUG----GGGGCGGgcuGG-GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 29026 0.74 0.111829
Target:  5'- gGCCCGGaCUCCGCCCcggcgaccGCCCCgCGCCg -3'
miRNA:   3'- aCGGGCUgGGGGCGGGc-------UGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 29506 0.71 0.187032
Target:  5'- cGCCCcgagaggggggGAUUCCCuCCCuccGCCCCCGCCg -3'
miRNA:   3'- aCGGG-----------CUGGGGGcGGGc--UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 29781 0.71 0.177855
Target:  5'- gGCCCGgcacgaGCUCCCGggcggacCCCGGCCCcgagcggCCGCCg -3'
miRNA:   3'- aCGGGC------UGGGGGC-------GGGCUGGG-------GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 29829 0.66 0.395019
Target:  5'- gGCa-GACCCCCGgCacggugagagggCGACCCCCGg- -3'
miRNA:   3'- aCGggCUGGGGGCgG------------GCUGGGGGCgg -5'
5484 5' -68.6 NC_001798.1 + 29952 0.73 0.136459
Target:  5'- gGgCCGACCCCCgGCCCGcuuaagcggucggggGaCCCCCGUg -3'
miRNA:   3'- aCgGGCUGGGGG-CGGGC---------------U-GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 30205 0.67 0.364998
Target:  5'- cGCCUcacGCCCCgCGCCCucuaaauccCCCCCGUUg -3'
miRNA:   3'- aCGGGc--UGGGG-GCGGGcu-------GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 30425 0.85 0.018955
Target:  5'- gGCCaCGcCCCCgGCCCGGCCCCCgGCCg -3'
miRNA:   3'- aCGG-GCuGGGGgCGGGCUGGGGG-CGG- -5'
5484 5' -68.6 NC_001798.1 + 30575 0.69 0.25011
Target:  5'- cGCCCcGCCCCUGCgCUGccagaguuuUCCCUGCCu -3'
miRNA:   3'- aCGGGcUGGGGGCG-GGCu--------GGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.