miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 30863 0.7 0.234146
Target:  5'- gGUCCGcGCCCUguCGCCC-ACCCCC-CCg -3'
miRNA:   3'- aCGGGC-UGGGG--GCGGGcUGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 31123 0.68 0.316364
Target:  5'- cGCCCGcCCCCCGaagagCG-CCCCgGCg -3'
miRNA:   3'- aCGGGCuGGGGGCgg---GCuGGGGgCGg -5'
5484 5' -68.6 NC_001798.1 + 31198 0.7 0.204788
Target:  5'- cGaCCCGACCggcgCCC-CCUGGCgCCCCGCg -3'
miRNA:   3'- aC-GGGCUGG----GGGcGGGCUG-GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 31422 0.68 0.305957
Target:  5'- cGCgCGGCCCaggaGCCCcccauagucaucagcGAcucuCCCCCGCCg -3'
miRNA:   3'- aCGgGCUGGGgg--CGGG---------------CU----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 31577 0.77 0.068957
Target:  5'- cGCCgCGcGCCCCCGCgCGGCCgUCGCCc -3'
miRNA:   3'- aCGG-GC-UGGGGGCGgGCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 31610 0.7 0.214202
Target:  5'- cGUCCGGaguccgCCCCGCgCCGccgccGCCCCCGUg -3'
miRNA:   3'- aCGGGCUg-----GGGGCG-GGC-----UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 31667 0.68 0.303397
Target:  5'- gGCCgGGCCCgcgCCGCCCG--CCgUGCCg -3'
miRNA:   3'- aCGGgCUGGG---GGCGGGCugGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 31883 0.66 0.409828
Target:  5'- gGCCCG-CCCCCggaagaggcgcggGUCgGACucgggCCCCGCg -3'
miRNA:   3'- aCGGGCuGGGGG-------------CGGgCUG-----GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 31948 0.72 0.162944
Target:  5'- cGCC--GCCCCgCGCUCGcCCCUCGCCc -3'
miRNA:   3'- aCGGgcUGGGG-GCGGGCuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32053 0.72 0.174618
Target:  5'- cGcCCCGGCgUCCGCgggcgCCGcGCCCCCGUCg -3'
miRNA:   3'- aC-GGGCUGgGGGCG-----GGC-UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32104 0.66 0.37981
Target:  5'- gGCCgCGgucGCCgCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGG-GC---UGGgGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32149 0.66 0.387366
Target:  5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32194 0.66 0.387366
Target:  5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32275 0.66 0.371614
Target:  5'- cGCUgGggagagacgagaaACCUCC-CUCGGCCCCCGCg -3'
miRNA:   3'- aCGGgC-------------UGGGGGcGGGCUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 32376 0.76 0.079814
Target:  5'- aGCCCGggGCCCgCGaCCCGGCgCCCgGCCu -3'
miRNA:   3'- aCGGGC--UGGGgGC-GGGCUG-GGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 32575 0.74 0.122991
Target:  5'- gGCCgCGGCCCCCGCgUGgaGCCgCCGCa -3'
miRNA:   3'- aCGG-GCUGGGGGCGgGC--UGGgGGCGg -5'
5484 5' -68.6 NC_001798.1 + 32629 0.7 0.234146
Target:  5'- cUGCgUGAggcCCCCCGacuaCCCGAcgcCCCCCGCg -3'
miRNA:   3'- -ACGgGCU---GGGGGC----GGGCU---GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 32790 0.7 0.219047
Target:  5'- cGCCCG-CgCCgGCCgGcgacGCCCCCGCg -3'
miRNA:   3'- aCGGGCuGgGGgCGGgC----UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 32855 0.73 0.128953
Target:  5'- cUGCCCGAaggaagccgcCCCCCaCCgGACCaCCgGCCg -3'
miRNA:   3'- -ACGGGCU----------GGGGGcGGgCUGG-GGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 33251 0.68 0.309829
Target:  5'- gGCCCGGCCUCguUCUGGCuCCCUGUCu -3'
miRNA:   3'- aCGGGCUGGGGgcGGGCUG-GGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.