miRNA display CGI


Results 61 - 80 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 143304 0.66 0.418558
Target:  5'- cGUCCG-CCCCCGgCgGGuCgCCgGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCgGgCU-GgGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 142533 0.77 0.074195
Target:  5'- cGCCCGACCacaCCC-CCCG-CCCCCGUa -3'
miRNA:   3'- aCGGGCUGG---GGGcGGGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 139404 0.72 0.174618
Target:  5'- gGUCCGcCCCCacagcaGCCCGggGCCagaCCCGCCg -3'
miRNA:   3'- aCGGGCuGGGGg-----CGGGC--UGG---GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 139315 0.67 0.323003
Target:  5'- cGCCCcGCgUCCGCaucgCCGGCgCCCGCg -3'
miRNA:   3'- aCGGGcUGgGGGCG----GGCUGgGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 138978 0.66 0.410617
Target:  5'- cGCCaCGugUcgaacaCCCGCUCGGCcaCCCCGgCg -3'
miRNA:   3'- aCGG-GCugG------GGGCGGGCUG--GGGGCgG- -5'
5484 5' -68.6 NC_001798.1 + 138176 0.71 0.195734
Target:  5'- gGCgCGACCCgCGgCCGgugccGCCCuuGCCg -3'
miRNA:   3'- aCGgGCUGGGgGCgGGC-----UGGGggCGG- -5'
5484 5' -68.6 NC_001798.1 + 137946 0.78 0.060561
Target:  5'- cGCCCGguccgccgcgcgcuGCUCCCGCUCcagcGCCCCCGCCu -3'
miRNA:   3'- aCGGGC--------------UGGGGGCGGGc---UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 137898 0.76 0.083784
Target:  5'- gGCCCGgagaagauccGCCUCCGCCgggCGGCCCgCGCCu -3'
miRNA:   3'- aCGGGC----------UGGGGGCGG---GCUGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 135892 0.71 0.195734
Target:  5'- cGuUCUGACCCCCccaggcgagGCCgaCGACCCCCuGCCc -3'
miRNA:   3'- aC-GGGCUGGGGG---------CGG--GCUGGGGG-CGG- -5'
5484 5' -68.6 NC_001798.1 + 135585 0.7 0.234146
Target:  5'- cGCCCG-CgCCUCGCCCccuCCCUggCGCCa -3'
miRNA:   3'- aCGGGCuG-GGGGCGGGcu-GGGG--GCGG- -5'
5484 5' -68.6 NC_001798.1 + 135353 0.66 0.418558
Target:  5'- cGCCUG-CCCCgCGCuCCGGCagCUGCUc -3'
miRNA:   3'- aCGGGCuGGGG-GCG-GGCUGggGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 135194 0.7 0.229018
Target:  5'- gGCCCaGCUCCUGgCCG-CCCUCGCg -3'
miRNA:   3'- aCGGGcUGGGGGCgGGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 134990 0.7 0.216129
Target:  5'- gGCCUGGCCCgCggugggcgccaggguCGUCCuGCCCCCGCg -3'
miRNA:   3'- aCGGGCUGGG-G---------------GCGGGcUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 134894 0.68 0.278102
Target:  5'- gGgCUGGCCCacguuuaCCGUgCCGGCCgCCGCCg -3'
miRNA:   3'- aCgGGCUGGG-------GGCG-GGCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 134795 0.75 0.094546
Target:  5'- cGCC--GCCCCCGgagcCCUGGCCCCCGUCu -3'
miRNA:   3'- aCGGgcUGGGGGC----GGGCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 134728 0.66 0.387366
Target:  5'- aGCCCGGCgacggguuCUCCGcCCCGGCgCUgGUCg -3'
miRNA:   3'- aCGGGCUG--------GGGGC-GGGCUGgGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 134517 0.67 0.329745
Target:  5'- gUGCgCGuCCUCCGCCUcGCUCgCCGUCa -3'
miRNA:   3'- -ACGgGCuGGGGGCGGGcUGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 134169 0.74 0.125939
Target:  5'- cGUCgCGGCCgCCCGCgCCGcgacgGCCCCgGCCg -3'
miRNA:   3'- aCGG-GCUGG-GGGCG-GGC-----UGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 133468 0.67 0.364998
Target:  5'- gUGgCCGACgCCCUGagcggCUGcCCCCCGCg -3'
miRNA:   3'- -ACgGGCUG-GGGGCg----GGCuGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 133230 0.67 0.329745
Target:  5'- gGCCCuACaCCCCaCCCuaaacgucGCCCCCGUCu -3'
miRNA:   3'- aCGGGcUG-GGGGcGGGc-------UGGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.