miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 132939 0.67 0.35059
Target:  5'- cUGCCagGACCCCgacaCGUCCcugucGGCCCaggCCGCCg -3'
miRNA:   3'- -ACGGg-CUGGGG----GCGGG-----CUGGG---GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 132153 0.67 0.33659
Target:  5'- gGCCgGcgggcggggcGCCCCC-CCCGgacGCCCCC-CCg -3'
miRNA:   3'- aCGGgC----------UGGGGGcGGGC---UGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 132117 0.68 0.303397
Target:  5'- gGCCCGAggUCCUGCaggCGGCCCUgCGCCg -3'
miRNA:   3'- aCGGGCUg-GGGGCGg--GCUGGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 131336 0.67 0.358464
Target:  5'- cGCCCGcGCCCCgggcgcgacgucggCGCCCGGCgcggccucgggggauCCCCuggggGCCc -3'
miRNA:   3'- aCGGGC-UGGGG--------------GCGGGCUG---------------GGGG-----CGG- -5'
5484 5' -68.6 NC_001798.1 + 131071 0.66 0.410617
Target:  5'- cGCCC-ACCgCgGCguacaCGGCCgCCGCCa -3'
miRNA:   3'- aCGGGcUGGgGgCGg----GCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 130428 0.71 0.18281
Target:  5'- cGCCagggcgacgcgGACUCCCGUCUgGGCCCCCgGCCa -3'
miRNA:   3'- aCGGg----------CUGGGGGCGGG-CUGGGGG-CGG- -5'
5484 5' -68.6 NC_001798.1 + 129759 0.67 0.364998
Target:  5'- gGCCCGcCCuCCUGCCaCGcucacGCCCCCa-- -3'
miRNA:   3'- aCGGGCuGG-GGGCGG-GC-----UGGGGGcgg -5'
5484 5' -68.6 NC_001798.1 + 129175 0.74 0.117286
Target:  5'- aGCCC-AUCUUCGCCa-ACCCCCGCCa -3'
miRNA:   3'- aCGGGcUGGGGGCGGgcUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 129004 0.68 0.301488
Target:  5'- gGCUCGAUUCCCGCgccgCCGGCgaaaaaaggcgaugCUCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCG----GGCUG--------------GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 128824 0.75 0.10661
Target:  5'- cGUUCGACCCCgCGgacCCCGgcGCCCCCGCg -3'
miRNA:   3'- aCGGGCUGGGG-GC---GGGC--UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 128761 0.81 0.033691
Target:  5'- -aCCUGGCCCCCGCCCcccaGACCCCCcugGCCu -3'
miRNA:   3'- acGGGCUGGGGGCGGG----CUGGGGG---CGG- -5'
5484 5' -68.6 NC_001798.1 + 128296 0.74 0.10841
Target:  5'- cGCCUGAcgcgccgcgccCCCCCGUCCGccgccgaagccgucGcCCCCCGCCc -3'
miRNA:   3'- aCGGGCU-----------GGGGGCGGGC--------------U-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 128062 0.68 0.316364
Target:  5'- aGcCCCGGuCCCCCGgacCCCGACCCgaUGUg -3'
miRNA:   3'- aC-GGGCU-GGGGGC---GGGCUGGGg-GCGg -5'
5484 5' -68.6 NC_001798.1 + 127999 0.67 0.329745
Target:  5'- gGCCCGccaACCCCCGacauuCCC--CUCUCGCCg -3'
miRNA:   3'- aCGGGC---UGGGGGC-----GGGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 127959 0.76 0.085838
Target:  5'- gGCCCGGCCCgCGucCCCGGCCCUCucugagGCCu -3'
miRNA:   3'- aCGGGCUGGGgGC--GGGCUGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 127853 0.73 0.128953
Target:  5'- gGCCCcg-CCCCGCCCca-CCCCGCCc -3'
miRNA:   3'- aCGGGcugGGGGCGGGcugGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 127785 0.69 0.242018
Target:  5'- cGCCCGcgaccccgauaguCCCCCGaagcggcCCCGACCCaacaGCCu -3'
miRNA:   3'- aCGGGCu------------GGGGGC-------GGGCUGGGgg--CGG- -5'
5484 5' -68.6 NC_001798.1 + 127109 0.66 0.395019
Target:  5'- aGCCgGACCucgaguCCC-CCCGgggguuugggauGCCCgCCGCCc -3'
miRNA:   3'- aCGGgCUGG------GGGcGGGC------------UGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 126452 0.69 0.275135
Target:  5'- cGCCCG-CCCCUGCgcagguccgagacggCCaugaccucGCCCCCGUCg -3'
miRNA:   3'- aCGGGCuGGGGGCG---------------GGc-------UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 126410 0.73 0.13518
Target:  5'- cGCUCGuCCCCCGa--GGCCCCCgGCCc -3'
miRNA:   3'- aCGGGCuGGGGGCgggCUGGGGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.