miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 126305 0.69 0.266961
Target:  5'- gGCgCCGucuCCggagCCCGcCCCGGgUCCCGCCg -3'
miRNA:   3'- aCG-GGCu--GG----GGGC-GGGCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 124358 0.68 0.290843
Target:  5'- cGCCCGACCagCGCCgGguggcGCCUCUGCg -3'
miRNA:   3'- aCGGGCUGGggGCGGgC-----UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 124278 0.66 0.372354
Target:  5'- gGCaggCGACCCgCCGCCCGcgcaucacgGCCCaCCuGCa -3'
miRNA:   3'- aCGg--GCUGGG-GGCGGGC---------UGGG-GG-CGg -5'
5484 5' -68.6 NC_001798.1 + 124096 0.7 0.234146
Target:  5'- cGCCCcgacGGCCCacaucgauuCCGCCaacgcgcuguggCGcGCCCCCGCCg -3'
miRNA:   3'- aCGGG----CUGGG---------GGCGG------------GC-UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 123807 0.74 0.10919
Target:  5'- cUGCCUccCCCCCGgaggaaaccCCCGACCCcgCCGCCg -3'
miRNA:   3'- -ACGGGcuGGGGGC---------GGGCUGGG--GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 123587 0.67 0.357743
Target:  5'- gUGCCagguGGCCCuuCCGgacCCCGACCCCgagcgUGCCc -3'
miRNA:   3'- -ACGGg---CUGGG--GGC---GGGCUGGGG-----GCGG- -5'
5484 5' -68.6 NC_001798.1 + 123452 0.68 0.278698
Target:  5'- cGCgCGcGCCCCCGaCCCGggGCCCgaaGCCg -3'
miRNA:   3'- aCGgGC-UGGGGGC-GGGC--UGGGgg-CGG- -5'
5484 5' -68.6 NC_001798.1 + 123397 0.74 0.120107
Target:  5'- cGCCaGGCCCCCcgggaGCCgCGG-CCCCGCCg -3'
miRNA:   3'- aCGGgCUGGGGG-----CGG-GCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 122866 0.66 0.40277
Target:  5'- aGCgaCGACauCCCCGCCCG--CUUCGCCg -3'
miRNA:   3'- aCGg-GCUG--GGGGCGGGCugGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 122508 0.7 0.229018
Target:  5'- cGCUCGAgggaCCCCUGCgCC-ACCCgCGCCc -3'
miRNA:   3'- aCGGGCU----GGGGGCG-GGcUGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 122380 0.7 0.209449
Target:  5'- cGCCCGcCCCCCGCggCUGuCCUCCgagcugGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCG--GGCuGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 121688 0.66 0.387366
Target:  5'- cGCgCGGCUggggGCCgCGGCUCCCGCCg -3'
miRNA:   3'- aCGgGCUGGggg-CGG-GCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 120213 0.79 0.055295
Target:  5'- aGCUCGGgCCCCggGCCguUGGCCCCCGCCg -3'
miRNA:   3'- aCGGGCUgGGGG--CGG--GCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 119712 0.76 0.087941
Target:  5'- uUGCUU--CCCCCGCCC-ACCCCCGCa -3'
miRNA:   3'- -ACGGGcuGGGGGCGGGcUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 119048 0.75 0.10162
Target:  5'- -cCCCGACCCCCggacGCCCGGggagcUCCCCGaCCu -3'
miRNA:   3'- acGGGCUGGGGG----CGGGCU-----GGGGGC-GG- -5'
5484 5' -68.6 NC_001798.1 + 118509 0.7 0.223986
Target:  5'- -uUCCGGCCCU--CCCGcACCCCCGCg -3'
miRNA:   3'- acGGGCUGGGGgcGGGC-UGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 118423 0.68 0.309829
Target:  5'- gUGCugCUGAgCCCUGCCCcGCCCCCucucCCa -3'
miRNA:   3'- -ACG--GGCUgGGGGCGGGcUGGGGGc---GG- -5'
5484 5' -68.6 NC_001798.1 + 118051 0.67 0.357743
Target:  5'- -aCCCGAUCaCCUGCgCCaGCgaCCCCGCCc -3'
miRNA:   3'- acGGGCUGG-GGGCG-GGcUG--GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 117833 0.68 0.316364
Target:  5'- gGCCUaucaccucaacgGGgCCUCGCCCGuccucaGCCCCUGCUu -3'
miRNA:   3'- aCGGG------------CUgGGGGCGGGC------UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 116975 0.68 0.297068
Target:  5'- cGCCCaACUUCCcCCCGGCCCUgCGCg -3'
miRNA:   3'- aCGGGcUGGGGGcGGGCUGGGG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.