miRNA display CGI


Results 121 - 140 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 116614 0.73 0.132033
Target:  5'- gUGCCCGAgcgaUCCCGUgaCCGA-CCCCGCCc -3'
miRNA:   3'- -ACGGGCUg---GGGGCG--GGCUgGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 116140 0.66 0.412989
Target:  5'- gGCCCacgucgaGGCCCUgGCCCaGCugguggacgacuuuaCCCUGCCg -3'
miRNA:   3'- aCGGG-------CUGGGGgCGGGcUG---------------GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 115529 0.72 0.170646
Target:  5'- cGUCgCGGCCCCgG-CCGGCCCCgGCg -3'
miRNA:   3'- aCGG-GCUGGGGgCgGGCUGGGGgCGg -5'
5484 5' -68.6 NC_001798.1 + 115329 0.76 0.081776
Target:  5'- gUGCCCG-CCCCCGgccaCCCGGagCCCCGCg -3'
miRNA:   3'- -ACGGGCuGGGGGC----GGGCUg-GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 114834 0.77 0.074195
Target:  5'- gUGgCCGugCCCCGCCUGACgCaCGCCg -3'
miRNA:   3'- -ACgGGCugGGGGCGGGCUGgGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 114071 0.71 0.177447
Target:  5'- cUGCCCgcGACCCCCcggguuaccgguacGCCgCGGCCauCCUGCCc -3'
miRNA:   3'- -ACGGG--CUGGGGG--------------CGG-GCUGG--GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 113005 0.66 0.37981
Target:  5'- aGCuuGGgUCCgGaCCCGGgCCCgCGCCg -3'
miRNA:   3'- aCGggCUgGGGgC-GGGCUgGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 111735 0.8 0.045385
Target:  5'- cGCuuGGCCCCCGCgcccCCGGCCCCgGUCc -3'
miRNA:   3'- aCGggCUGGGGGCG----GGCUGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 111423 0.73 0.148472
Target:  5'- aGCgCGGCCCCgagaaaCGCCCGcggaGCCCCCaCCg -3'
miRNA:   3'- aCGgGCUGGGG------GCGGGC----UGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 110914 0.68 0.290843
Target:  5'- gGCCagccGCCCCCG-CCGGCCCgCgGUCa -3'
miRNA:   3'- aCGGgc--UGGGGGCgGGCUGGG-GgCGG- -5'
5484 5' -68.6 NC_001798.1 + 110262 0.66 0.387366
Target:  5'- cGCaCCGAaaaCCgGCgCGACCUCgGCCu -3'
miRNA:   3'- aCG-GGCUgg-GGgCGgGCUGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 109925 0.67 0.323003
Target:  5'- gGCCaUGGCCaCCCGaUCCGACaUCCCGgCg -3'
miRNA:   3'- aCGG-GCUGG-GGGC-GGGCUG-GGGGCgG- -5'
5484 5' -68.6 NC_001798.1 + 109769 0.66 0.372354
Target:  5'- cGUCCGACgUCgCGCggCGACCCaCGCCg -3'
miRNA:   3'- aCGGGCUGgGG-GCGg-GCUGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 109020 0.69 0.257862
Target:  5'- cGCCCccgcggugcuccccgGGCCUCCGgCCGGCCCCagguauCGCg -3'
miRNA:   3'- aCGGG---------------CUGGGGGCgGGCUGGGG------GCGg -5'
5484 5' -68.6 NC_001798.1 + 108473 0.79 0.051863
Target:  5'- cUGCCCGAgcUCCCCGaggcggggcccacguCCCGucCCCCCGCCg -3'
miRNA:   3'- -ACGGGCU--GGGGGC---------------GGGCu-GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 108260 0.71 0.178672
Target:  5'- uUGCCCaacACCCCCgacGCCagCGACCCCCaGCg -3'
miRNA:   3'- -ACGGGc--UGGGGG---CGG--GCUGGGGG-CGg -5'
5484 5' -68.6 NC_001798.1 + 107437 0.72 0.159211
Target:  5'- cGCCgcggCGACCCCgCGcCCCGACCCCgaggacggCGCg -3'
miRNA:   3'- aCGG----GCUGGGG-GC-GGGCUGGGG--------GCGg -5'
5484 5' -68.6 NC_001798.1 + 107215 0.66 0.395019
Target:  5'- gGCCCucauGCCCCCGaCCG-CgCCCGgCa -3'
miRNA:   3'- aCGGGc---UGGGGGCgGGCuGgGGGCgG- -5'
5484 5' -68.6 NC_001798.1 + 107087 0.72 0.162944
Target:  5'- gGCCCGcaAgCCCCGCCCccGGCCCUCaCCc -3'
miRNA:   3'- aCGGGC--UgGGGGCGGG--CUGGGGGcGG- -5'
5484 5' -68.6 NC_001798.1 + 105435 0.71 0.19134
Target:  5'- gGCCUGcagcACUgCCGCCCGcUCCgCCGCCg -3'
miRNA:   3'- aCGGGC----UGGgGGCGGGCuGGG-GGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.