miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 25825 0.66 0.418558
Target:  5'- cUGgCCGGCgCCUGC--GACCgCCGCCu -3'
miRNA:   3'- -ACgGGCUGgGGGCGggCUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 37290 0.66 0.418558
Target:  5'- gGCCC-ACCCUgGCgugggaggCGACCuCCCGUCg -3'
miRNA:   3'- aCGGGcUGGGGgCGg-------GCUGG-GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 104656 0.66 0.418558
Target:  5'- gGCCagGGCCCCgUGCUcguagCGGCCgCCgGCCg -3'
miRNA:   3'- aCGGg-CUGGGG-GCGG-----GCUGG-GGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 135353 0.66 0.418558
Target:  5'- cGCCUG-CCCCgCGCuCCGGCagCUGCUc -3'
miRNA:   3'- aCGGGCuGGGG-GCG-GGCUGggGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 145106 0.66 0.418558
Target:  5'- uUGCCUGugacccACCCCaCGCCCcccaGGCUCCCauaacgacaaGCCc -3'
miRNA:   3'- -ACGGGC------UGGGG-GCGGG----CUGGGGG----------CGG- -5'
5484 5' -68.6 NC_001798.1 + 145749 0.66 0.410617
Target:  5'- cGCCacACCCaCgGCaCCccCCCCCGCCg -3'
miRNA:   3'- aCGGgcUGGG-GgCG-GGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 52781 0.66 0.410617
Target:  5'- cGCCCcgGGCgCCCGUgagcgggaCGGCagaCCCCGCCu -3'
miRNA:   3'- aCGGG--CUGgGGGCGg-------GCUG---GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 22615 0.66 0.395019
Target:  5'- cUGCCaaccACCCCC-CCCcACUgCCGCCc -3'
miRNA:   3'- -ACGGgc--UGGGGGcGGGcUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 27940 0.66 0.395019
Target:  5'- gGuCCCGGCgCCgGCCgCG-CCCCgGCg -3'
miRNA:   3'- aC-GGGCUGgGGgCGG-GCuGGGGgCGg -5'
5484 5' -68.6 NC_001798.1 + 48365 0.66 0.395019
Target:  5'- cGCCCGGggcCgCCCCGCggggCGugCCgCCGCg -3'
miRNA:   3'- aCGGGCU---G-GGGGCGg---GCugGG-GGCGg -5'
5484 5' -68.6 NC_001798.1 + 107215 0.66 0.395019
Target:  5'- gGCCCucauGCCCCCGaCCG-CgCCCGgCa -3'
miRNA:   3'- aCGGGc---UGGGGGCgGGCuGgGGGCgG- -5'
5484 5' -68.6 NC_001798.1 + 122866 0.66 0.40277
Target:  5'- aGCgaCGACauCCCCGCCCG--CUUCGCCg -3'
miRNA:   3'- aCGg-GCUG--GGGGCGGGCugGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 59608 0.66 0.40277
Target:  5'- cGUagCGGCCgCCGUCCccaccACCCuCCGCCg -3'
miRNA:   3'- aCGg-GCUGGgGGCGGGc----UGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 103492 0.66 0.40277
Target:  5'- gGUCCagGGCCagCUCGCCCgGGUCCCCGCUg -3'
miRNA:   3'- aCGGG--CUGG--GGGCGGG-CUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 103982 0.66 0.40277
Target:  5'- aGCCCaGGCCCCUGUUCGuauuguauCCCCaagGCa -3'
miRNA:   3'- aCGGG-CUGGGGGCGGGCu-------GGGGg--CGg -5'
5484 5' -68.6 NC_001798.1 + 151269 0.66 0.40277
Target:  5'- cGUgCCGGCCCgcacggCCGCCuCGGCCuCCaCGCg -3'
miRNA:   3'- aCG-GGCUGGG------GGCGG-GCUGG-GG-GCGg -5'
5484 5' -68.6 NC_001798.1 + 151555 0.66 0.40277
Target:  5'- gGCCC-ACCCCCaCagGAUCCCUGCg -3'
miRNA:   3'- aCGGGcUGGGGGcGggCUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 151649 0.66 0.40277
Target:  5'- gGCCCGccucgaacAUCUCCGUguCCGugCugCCCGCCu -3'
miRNA:   3'- aCGGGC--------UGGGGGCG--GGCugG--GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 31883 0.66 0.409828
Target:  5'- gGCCCG-CCCCCggaagaggcgcggGUCgGACucgggCCCCGCg -3'
miRNA:   3'- aCGGGCuGGGGG-------------CGGgCUG-----GGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 42440 0.66 0.409828
Target:  5'- cGCCUGcuggaucACCCUCGCC--ACCCCaCGCa -3'
miRNA:   3'- aCGGGC-------UGGGGGCGGgcUGGGG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.