miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 80581 0.66 0.37981
Target:  5'- gGCCCcccacGCCCUCuaCCGACCCacggGCCa -3'
miRNA:   3'- aCGGGc----UGGGGGcgGGCUGGGgg--CGG- -5'
5484 5' -68.6 NC_001798.1 + 50423 0.66 0.37981
Target:  5'- cGCCCccCCCCCaccaccgccccGCCUcACCUCCGUCu -3'
miRNA:   3'- aCGGGcuGGGGG-----------CGGGcUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 7415 0.66 0.37981
Target:  5'- -cCCgCGACCCCCa--CGACCCCCacggguGCCc -3'
miRNA:   3'- acGG-GCUGGGGGcggGCUGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 85244 0.66 0.37981
Target:  5'- cGCCCG-CCCCC-CCgCGGCCgCgcgggGCCg -3'
miRNA:   3'- aCGGGCuGGGGGcGG-GCUGGgGg----CGG- -5'
5484 5' -68.6 NC_001798.1 + 32104 0.66 0.37981
Target:  5'- gGCCgCGgucGCCgCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGG-GC---UGGgGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 20688 0.66 0.37981
Target:  5'- cGUCCGACggCCCCGUucccuCCGAuuccgUCCCCGUg -3'
miRNA:   3'- aCGGGCUG--GGGGCG-----GGCU-----GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 113005 0.66 0.37981
Target:  5'- aGCuuGGgUCCgGaCCCGGgCCCgCGCCg -3'
miRNA:   3'- aCGggCUgGGGgC-GGGCUgGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 153170 0.66 0.387366
Target:  5'- aGCuCCgGGgCUCCGCCgGccgaggccGCCCUCGCCg -3'
miRNA:   3'- aCG-GG-CUgGGGGCGGgC--------UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32149 0.66 0.387366
Target:  5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32194 0.66 0.387366
Target:  5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 48365 0.66 0.395019
Target:  5'- cGCCCGGggcCgCCCCGCggggCGugCCgCCGCg -3'
miRNA:   3'- aCGGGCU---G-GGGGCGg---GCugGG-GGCGg -5'
5484 5' -68.6 NC_001798.1 + 27940 0.66 0.395019
Target:  5'- gGuCCCGGCgCCgGCCgCG-CCCCgGCg -3'
miRNA:   3'- aC-GGGCUGgGGgCGG-GCuGGGGgCGg -5'
5484 5' -68.6 NC_001798.1 + 22615 0.66 0.395019
Target:  5'- cUGCCaaccACCCCC-CCCcACUgCCGCCc -3'
miRNA:   3'- -ACGGgc--UGGGGGcGGGcUGGgGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 29829 0.66 0.395019
Target:  5'- gGCa-GACCCCCGgCacggugagagggCGACCCCCGg- -3'
miRNA:   3'- aCGggCUGGGGGCgG------------GCUGGGGGCgg -5'
5484 5' -68.6 NC_001798.1 + 127109 0.66 0.395019
Target:  5'- aGCCgGACCucgaguCCC-CCCGgggguuugggauGCCCgCCGCCc -3'
miRNA:   3'- aCGGgCUGG------GGGcGGGC------------UGGG-GGCGG- -5'
5484 5' -68.6 NC_001798.1 + 27975 0.66 0.39425
Target:  5'- gUGCCgCG-CCCCgGCgcuccagCCGugCCgCGCCc -3'
miRNA:   3'- -ACGG-GCuGGGGgCG-------GGCugGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 110262 0.66 0.387366
Target:  5'- cGCaCCGAaaaCCgGCgCGACCUCgGCCu -3'
miRNA:   3'- aCG-GGCUgg-GGgCGgGCUGGGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 91501 0.66 0.387366
Target:  5'- -cCCCGGCUCuuaCCGgCgGACCCgCGCCc -3'
miRNA:   3'- acGGGCUGGG---GGCgGgCUGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 121688 0.66 0.387366
Target:  5'- cGCgCGGCUggggGCCgCGGCUCCCGCCg -3'
miRNA:   3'- aCGgGCUGGggg-CGG-GCUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 48084 0.66 0.387366
Target:  5'- aGCaCCG-CCCCaccgaGCCCcacggcgccgugGACCCCCcgggugGCCg -3'
miRNA:   3'- aCG-GGCuGGGGg----CGGG------------CUGGGGG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.