miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5484 5' -68.6 NC_001798.1 + 85000 0.67 0.364268
Target:  5'- cGCgUG-CgCCCCGCUCGACCggccauggcgacgUCCGCCc -3'
miRNA:   3'- aCGgGCuG-GGGGCGGGCUGG-------------GGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 147399 0.67 0.363539
Target:  5'- cGCUCuccucacauuuCCCCC-CCCccCCCCCGCCg -3'
miRNA:   3'- aCGGGcu---------GGGGGcGGGcuGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 7635 0.66 0.372354
Target:  5'- cGCggaCCGGCCCCCGgaguccCCCGGCUCCgaGUUg -3'
miRNA:   3'- aCG---GGCUGGGGGC------GGGCUGGGGg-CGG- -5'
5484 5' -68.6 NC_001798.1 + 58383 0.66 0.372354
Target:  5'- gGCCUGACggagCCgCGUCaGACCCUCGCg -3'
miRNA:   3'- aCGGGCUG----GGgGCGGgCUGGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 109769 0.66 0.372354
Target:  5'- cGUCCGACgUCgCGCggCGACCCaCGCCg -3'
miRNA:   3'- aCGGGCUGgGG-GCGg-GCUGGGgGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32194 0.66 0.387366
Target:  5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 32149 0.66 0.387366
Target:  5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 153170 0.66 0.387366
Target:  5'- aGCuCCgGGgCUCCGCCgGccgaggccGCCCUCGCCg -3'
miRNA:   3'- aCG-GG-CUgGGGGCGGgC--------UGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 134728 0.66 0.387366
Target:  5'- aGCCCGGCgacggguuCUCCGcCCCGGCgCUgGUCg -3'
miRNA:   3'- aCGGGCUG--------GGGGC-GGGCUGgGGgCGG- -5'
5484 5' -68.6 NC_001798.1 + 89275 0.66 0.387366
Target:  5'- gGaCCCgGGCCCCCugguacccaacGUgCCGGCCCCCGg- -3'
miRNA:   3'- aC-GGG-CUGGGGG-----------CG-GGCUGGGGGCgg -5'
5484 5' -68.6 NC_001798.1 + 22078 0.66 0.385089
Target:  5'- gGCCCcGCCCCCuuuggggcggagccGCCCGcggaccaacgggGCgaCCUCGCCg -3'
miRNA:   3'- aCGGGcUGGGGG--------------CGGGC------------UG--GGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 80581 0.66 0.37981
Target:  5'- gGCCCcccacGCCCUCuaCCGACCCacggGCCa -3'
miRNA:   3'- aCGGGc----UGGGGGcgGGCUGGGgg--CGG- -5'
5484 5' -68.6 NC_001798.1 + 50423 0.66 0.37981
Target:  5'- cGCCCccCCCCCaccaccgccccGCCUcACCUCCGUCu -3'
miRNA:   3'- aCGGGcuGGGGG-----------CGGGcUGGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 7415 0.66 0.37981
Target:  5'- -cCCgCGACCCCCa--CGACCCCCacggguGCCc -3'
miRNA:   3'- acGG-GCUGGGGGcggGCUGGGGG------CGG- -5'
5484 5' -68.6 NC_001798.1 + 85244 0.66 0.37981
Target:  5'- cGCCCG-CCCCC-CCgCGGCCgCgcgggGCCg -3'
miRNA:   3'- aCGGGCuGGGGGcGG-GCUGGgGg----CGG- -5'
5484 5' -68.6 NC_001798.1 + 32104 0.66 0.37981
Target:  5'- gGCCgCGgucGCCgCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGG-GC---UGGgGGCGGGcu----GGGGGCGG- -5'
5484 5' -68.6 NC_001798.1 + 20688 0.66 0.37981
Target:  5'- cGUCCGACggCCCCGUucccuCCGAuuccgUCCCCGUg -3'
miRNA:   3'- aCGGGCUG--GGGGCG-----GGCU-----GGGGGCGg -5'
5484 5' -68.6 NC_001798.1 + 113005 0.66 0.37981
Target:  5'- aGCuuGGgUCCgGaCCCGGgCCCgCGCCg -3'
miRNA:   3'- aCGggCUgGGGgC-GGGCUgGGG-GCGG- -5'
5484 5' -68.6 NC_001798.1 + 146500 0.66 0.372354
Target:  5'- gGgCCGGCaacgCCCCGCgCCGGCCgCgGCg -3'
miRNA:   3'- aCgGGCUG----GGGGCG-GGCUGGgGgCGg -5'
5484 5' -68.6 NC_001798.1 + 124278 0.66 0.372354
Target:  5'- gGCaggCGACCCgCCGCCCGcgcaucacgGCCCaCCuGCa -3'
miRNA:   3'- aCGg--GCUGGG-GGCGGGC---------UGGG-GG-CGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.