Results 101 - 120 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5484 | 5' | -68.6 | NC_001798.1 | + | 5399 | 0.66 | 0.372354 |
Target: 5'- gGCCCGuuggucgcgccGCCgCCGCUCcGCCCgCGCg -3' miRNA: 3'- aCGGGC-----------UGGgGGCGGGcUGGGgGCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 94983 | 0.66 | 0.372354 |
Target: 5'- gUGCaggCGGCggCCGCCUGGgCCCCGCa -3' miRNA: 3'- -ACGg--GCUGggGGCGGGCUgGGGGCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 23404 | 0.66 | 0.372354 |
Target: 5'- cGUCgGcguCCUCCGCCUccuCCUCCGCCu -3' miRNA: 3'- aCGGgCu--GGGGGCGGGcu-GGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 32275 | 0.66 | 0.371614 |
Target: 5'- cGCUgGggagagacgagaaACCUCC-CUCGGCCCCCGCg -3' miRNA: 3'- aCGGgC-------------UGGGGGcGGGCUGGGGGCGg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 71205 | 0.66 | 0.370137 |
Target: 5'- cGUCCGGCCgucaccggCCUGCugcagcuaggggagCCGcCCUCCGCCg -3' miRNA: 3'- aCGGGCUGG--------GGGCG--------------GGCuGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 85244 | 0.66 | 0.37981 |
Target: 5'- cGCCCG-CCCCC-CCgCGGCCgCgcgggGCCg -3' miRNA: 3'- aCGGGCuGGGGGcGG-GCUGGgGg----CGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 7415 | 0.66 | 0.37981 |
Target: 5'- -cCCgCGACCCCCa--CGACCCCCacggguGCCc -3' miRNA: 3'- acGG-GCUGGGGGcggGCUGGGGG------CGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 27975 | 0.66 | 0.39425 |
Target: 5'- gUGCCgCG-CCCCgGCgcuccagCCGugCCgCGCCc -3' miRNA: 3'- -ACGG-GCuGGGGgCG-------GGCugGGgGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 110262 | 0.66 | 0.387366 |
Target: 5'- cGCaCCGAaaaCCgGCgCGACCUCgGCCu -3' miRNA: 3'- aCG-GGCUgg-GGgCGgGCUGGGGgCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 91501 | 0.66 | 0.387366 |
Target: 5'- -cCCCGGCUCuuaCCGgCgGACCCgCGCCc -3' miRNA: 3'- acGGGCUGGG---GGCgGgCUGGGgGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 121688 | 0.66 | 0.387366 |
Target: 5'- cGCgCGGCUggggGCCgCGGCUCCCGCCg -3' miRNA: 3'- aCGgGCUGGggg-CGG-GCUGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 48084 | 0.66 | 0.387366 |
Target: 5'- aGCaCCG-CCCCaccgaGCCCcacggcgccgugGACCCCCcgggugGCCg -3' miRNA: 3'- aCG-GGCuGGGGg----CGGG------------CUGGGGG------CGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 32194 | 0.66 | 0.387366 |
Target: 5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3' miRNA: 3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 32149 | 0.66 | 0.387366 |
Target: 5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3' miRNA: 3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 153170 | 0.66 | 0.387366 |
Target: 5'- aGCuCCgGGgCUCCGCCgGccgaggccGCCCUCGCCg -3' miRNA: 3'- aCG-GG-CUgGGGGCGGgC--------UGGGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 134728 | 0.66 | 0.387366 |
Target: 5'- aGCCCGGCgacggguuCUCCGcCCCGGCgCUgGUCg -3' miRNA: 3'- aCGGGCUG--------GGGGC-GGGCUGgGGgCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 89275 | 0.66 | 0.387366 |
Target: 5'- gGaCCCgGGCCCCCugguacccaacGUgCCGGCCCCCGg- -3' miRNA: 3'- aC-GGG-CUGGGGG-----------CG-GGCUGGGGGCgg -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 22078 | 0.66 | 0.385089 |
Target: 5'- gGCCCcGCCCCCuuuggggcggagccGCCCGcggaccaacgggGCgaCCUCGCCg -3' miRNA: 3'- aCGGGcUGGGGG--------------CGGGC------------UG--GGGGCGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 80581 | 0.66 | 0.37981 |
Target: 5'- gGCCCcccacGCCCUCuaCCGACCCacggGCCa -3' miRNA: 3'- aCGGGc----UGGGGGcgGGCUGGGgg--CGG- -5' |
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5484 | 5' | -68.6 | NC_001798.1 | + | 50423 | 0.66 | 0.37981 |
Target: 5'- cGCCCccCCCCCaccaccgccccGCCUcACCUCCGUCu -3' miRNA: 3'- aCGGGcuGGGGG-----------CGGGcUGGGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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