miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5486 3' -53.5 NC_001798.1 + 27795 0.66 0.968673
Target:  5'- gGGuGAGUUCGCUaGGCAaGCAcGgACu -3'
miRNA:   3'- -CCuCUCAAGUGAgCCGUgCGUaCgUG- -5'
5486 3' -53.5 NC_001798.1 + 76257 0.66 0.968673
Target:  5'- cGGGAcgUCGCUCaGCGCGCc-GCGCu -3'
miRNA:   3'- cCUCUcaAGUGAGcCGUGCGuaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 149418 0.66 0.965488
Target:  5'- cGGGGGGccUCACgcaguuGCGCGCGUGCuCg -3'
miRNA:   3'- -CCUCUCa-AGUGagc---CGUGCGUACGuG- -5'
5486 3' -53.5 NC_001798.1 + 92299 0.66 0.965488
Target:  5'- uGGAGcugcugUCGCuacugUCGGCGCGCAgcgGCGa -3'
miRNA:   3'- -CCUCuca---AGUG-----AGCCGUGCGUa--CGUg -5'
5486 3' -53.5 NC_001798.1 + 34091 0.66 0.965488
Target:  5'- gGGGGGGUg-AC-CGGCGCGUggGgGCg -3'
miRNA:   3'- -CCUCUCAagUGaGCCGUGCGuaCgUG- -5'
5486 3' -53.5 NC_001798.1 + 60788 0.66 0.962082
Target:  5'- aGGAucccGUUCAgCUCGGCGCccuGCA-GCACu -3'
miRNA:   3'- -CCUcu--CAAGU-GAGCCGUG---CGUaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 143081 0.66 0.954584
Target:  5'- uGGAGGcucuugUUGCUgcgUGGUACGCAUGUGCg -3'
miRNA:   3'- -CCUCUca----AGUGA---GCCGUGCGUACGUG- -5'
5486 3' -53.5 NC_001798.1 + 68432 0.66 0.954584
Target:  5'- uGGGGGUUCgugACUUGGCuCGCcgaGCACc -3'
miRNA:   3'- cCUCUCAAG---UGAGCCGuGCGua-CGUG- -5'
5486 3' -53.5 NC_001798.1 + 43589 0.67 0.950483
Target:  5'- cGGAu-GUUCAgCUgGGCGCGCAcGUGCc -3'
miRNA:   3'- -CCUcuCAAGU-GAgCCGUGCGUaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 109197 0.67 0.946142
Target:  5'- gGGGGAGgacccggGCUcCGGCACGgAcGCGCg -3'
miRNA:   3'- -CCUCUCaag----UGA-GCCGUGCgUaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 27161 0.67 0.940612
Target:  5'- gGGAGGGgcugcugcgaGCUCGGgGcCGCggGCGCg -3'
miRNA:   3'- -CCUCUCaag-------UGAGCCgU-GCGuaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 32833 0.67 0.936728
Target:  5'- gGGGGAGcuaaCACUCGGCuuGC-UGCcCg -3'
miRNA:   3'- -CCUCUCaa--GUGAGCCGugCGuACGuG- -5'
5486 3' -53.5 NC_001798.1 + 85976 0.68 0.926327
Target:  5'- cGGGGAGUUCgaggccgccGC-CGGgGCGCugGCGCa -3'
miRNA:   3'- -CCUCUCAAG---------UGaGCCgUGCGuaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 35133 0.68 0.925232
Target:  5'- gGGAGAGgagaag-GGCGCGCcgGUGCGCg -3'
miRNA:   3'- -CCUCUCaagugagCCGUGCG--UACGUG- -5'
5486 3' -53.5 NC_001798.1 + 1655 0.68 0.895996
Target:  5'- -cGGGGU--ACa-GGCGCGCGUGCGCg -3'
miRNA:   3'- ccUCUCAagUGagCCGUGCGUACGUG- -5'
5486 3' -53.5 NC_001798.1 + 36484 0.69 0.885012
Target:  5'- gGGAGGGggCGC-CGGCGCgacgcgggcggccggGCGgggGCGCg -3'
miRNA:   3'- -CCUCUCaaGUGaGCCGUG---------------CGUa--CGUG- -5'
5486 3' -53.5 NC_001798.1 + 154040 0.69 0.882172
Target:  5'- uGGGAGcgCGC-CGGgGCGCG-GCACg -3'
miRNA:   3'- cCUCUCaaGUGaGCCgUGCGUaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 149247 0.69 0.874911
Target:  5'- cGGGGGcgUCGC-CGGCcgGCGCggGCGCg -3'
miRNA:   3'- cCUCUCa-AGUGaGCCG--UGCGuaCGUG- -5'
5486 3' -53.5 NC_001798.1 + 126727 0.69 0.874911
Target:  5'- gGGGGAGUgCGCUCuuCGCGCGgccGCACc -3'
miRNA:   3'- -CCUCUCAaGUGAGccGUGCGUa--CGUG- -5'
5486 3' -53.5 NC_001798.1 + 26260 0.69 0.85972
Target:  5'- aGGAcGAGgcgCACUCGcacCGCGCcUGCGCg -3'
miRNA:   3'- -CCU-CUCaa-GUGAGCc--GUGCGuACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.