miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5488 5' -50.1 NC_001798.1 + 1439 0.66 0.992456
Target:  5'- -------aGGCGcGGUGCGAGUGCg- -3'
miRNA:   3'- uaauaaucCCGUuUCACGCUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 2240 0.67 0.985208
Target:  5'- ------cGGGcCGAAGgcgGCGGGCGCg- -3'
miRNA:   3'- uaauaauCCC-GUUUCa--CGCUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 2268 0.69 0.96032
Target:  5'- -----gGGGGCGGGGcgGCGcAGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUUUCa-CGC-UCGCGac -5'
5488 5' -50.1 NC_001798.1 + 5704 1.08 0.009908
Target:  5'- uAUUAUUAGGGCAAAGUGCGAGCGCUGg -3'
miRNA:   3'- -UAAUAAUCCCGUUUCACGCUCGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 5842 0.95 0.060658
Target:  5'- uAUUAUUAGGGCAAAGUGCGAGCaCUGg -3'
miRNA:   3'- -UAAUAAUCCCGUUUCACGCUCGcGAC- -5'
5488 5' -50.1 NC_001798.1 + 12721 0.71 0.909194
Target:  5'- -----gGGGGCGuGGUGCG-GCGCg- -3'
miRNA:   3'- uaauaaUCCCGUuUCACGCuCGCGac -5'
5488 5' -50.1 NC_001798.1 + 15082 0.67 0.988565
Target:  5'- uUUGUUGGGGUucggaguucgGAAG-GCGAggccggugGCGCUGu -3'
miRNA:   3'- uAAUAAUCCCG----------UUUCaCGCU--------CGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 21891 0.71 0.888628
Target:  5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3'
miRNA:   3'- uaAUAAUCCcGUUUCACGCUcGCGAc -5'
5488 5' -50.1 NC_001798.1 + 22028 0.71 0.888628
Target:  5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3'
miRNA:   3'- uaAUAAUCCcGUUUCACGCUcGCGAc -5'
5488 5' -50.1 NC_001798.1 + 29904 0.67 0.988565
Target:  5'- --gGUUGGGGguG-GUcGCGGGCGgUGg -3'
miRNA:   3'- uaaUAAUCCCguUuCA-CGCUCGCgAC- -5'
5488 5' -50.1 NC_001798.1 + 31152 0.69 0.947781
Target:  5'- -----gGGGGCGGcGGUGCGGGgGCg- -3'
miRNA:   3'- uaauaaUCCCGUU-UCACGCUCgCGac -5'
5488 5' -50.1 NC_001798.1 + 32717 0.69 0.963992
Target:  5'- -----cAGGGCAcccuGGUGgGcGCGCUGg -3'
miRNA:   3'- uaauaaUCCCGUu---UCACgCuCGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 33500 0.71 0.902603
Target:  5'- ----gUGGGGCGGGG-GCGAGgGCg- -3'
miRNA:   3'- uaauaAUCCCGUUUCaCGCUCgCGac -5'
5488 5' -50.1 NC_001798.1 + 34082 0.71 0.902603
Target:  5'- gGUUGUUGGGGgGGGGUGaCcGGCGCg- -3'
miRNA:   3'- -UAAUAAUCCCgUUUCAC-GcUCGCGac -5'
5488 5' -50.1 NC_001798.1 + 43498 0.67 0.983271
Target:  5'- -----cGGGGCAuacGUGCGcGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUuu-CACGCuCGCGac -5'
5488 5' -50.1 NC_001798.1 + 67938 0.73 0.804418
Target:  5'- -----aGGGGUggGGUGCGAucguGUGCUGa -3'
miRNA:   3'- uaauaaUCCCGuuUCACGCU----CGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 77702 0.75 0.702736
Target:  5'- -----cGGGGCAGca-GCGAGCGCUGg -3'
miRNA:   3'- uaauaaUCCCGUUucaCGCUCGCGAC- -5'
5488 5' -50.1 NC_001798.1 + 85829 0.69 0.963992
Target:  5'- -----gGGGGCGGGGgcggGCGGGgGCUc -3'
miRNA:   3'- uaauaaUCCCGUUUCa---CGCUCgCGAc -5'
5488 5' -50.1 NC_001798.1 + 91729 0.75 0.744842
Target:  5'- uAUUAUUAGGaCAAAGUGCGAaCGCUu -3'
miRNA:   3'- -UAAUAAUCCcGUUUCACGCUcGCGAc -5'
5488 5' -50.1 NC_001798.1 + 97537 0.69 0.96032
Target:  5'- -----gGGGGCGGAG-GCGuGGCGCg- -3'
miRNA:   3'- uaauaaUCCCGUUUCaCGC-UCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.