Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5488 | 5' | -50.1 | NC_001798.1 | + | 31152 | 0.69 | 0.947781 |
Target: 5'- -----gGGGGCGGcGGUGCGGGgGCg- -3' miRNA: 3'- uaauaaUCCCGUU-UCACGCUCgCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 12721 | 0.71 | 0.909194 |
Target: 5'- -----gGGGGCGuGGUGCG-GCGCg- -3' miRNA: 3'- uaauaaUCCCGUuUCACGCuCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 34082 | 0.71 | 0.902603 |
Target: 5'- gGUUGUUGGGGgGGGGUGaCcGGCGCg- -3' miRNA: 3'- -UAAUAAUCCCgUUUCAC-GcUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 33500 | 0.71 | 0.902603 |
Target: 5'- ----gUGGGGCGGGG-GCGAGgGCg- -3' miRNA: 3'- uaauaAUCCCGUUUCaCGCUCgCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 21891 | 0.71 | 0.888628 |
Target: 5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3' miRNA: 3'- uaAUAAUCCcGUUUCACGCUcGCGAc -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 22028 | 0.71 | 0.888628 |
Target: 5'- -cUAUUAGGaCGAAGUGCGAaCGCUu -3' miRNA: 3'- uaAUAAUCCcGUUUCACGCUcGCGAc -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 148443 | 0.72 | 0.865757 |
Target: 5'- ------cGGGCGuAAGUGCGGGUGCa- -3' miRNA: 3'- uaauaauCCCGU-UUCACGCUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 67938 | 0.73 | 0.804418 |
Target: 5'- -----aGGGGUggGGUGCGAucguGUGCUGa -3' miRNA: 3'- uaauaaUCCCGuuUCACGCU----CGCGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 91729 | 0.75 | 0.744842 |
Target: 5'- uAUUAUUAGGaCAAAGUGCGAaCGCUu -3' miRNA: 3'- -UAAUAAUCCcGUUUCACGCUcGCGAc -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 77702 | 0.75 | 0.702736 |
Target: 5'- -----cGGGGCAGca-GCGAGCGCUGg -3' miRNA: 3'- uaauaaUCCCGUUucaCGCUCGCGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 150087 | 0.79 | 0.529958 |
Target: 5'- -----gGGGGCGAGGgGCGAGCGCg- -3' miRNA: 3'- uaauaaUCCCGUUUCaCGCUCGCGac -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 5842 | 0.95 | 0.060658 |
Target: 5'- uAUUAUUAGGGCAAAGUGCGAGCaCUGg -3' miRNA: 3'- -UAAUAAUCCCGUUUCACGCUCGcGAC- -5' |
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5488 | 5' | -50.1 | NC_001798.1 | + | 5704 | 1.08 | 0.009908 |
Target: 5'- uAUUAUUAGGGCAAAGUGCGAGCGCUGg -3' miRNA: 3'- -UAAUAAUCCCGUUUCACGCUCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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