Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5489 | 3' | -48.4 | NC_001798.1 | + | 26263 | 0.66 | 0.999161 |
Target: 5'- aCGAGGCGcacUCGCACcgCG-CCUGc-- -3' miRNA: 3'- -GCUUCGCa--AGCGUGaaGCaGGAUuau -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 126354 | 0.66 | 0.99897 |
Target: 5'- gGGAGCGgcuUCGCGCgggacUGUCCcGAUGg -3' miRNA: 3'- gCUUCGCa--AGCGUGaa---GCAGGaUUAU- -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 23056 | 0.67 | 0.998474 |
Target: 5'- aCGAGGcCGUUCGCACgaucccgUCGcCCc---- -3' miRNA: 3'- -GCUUC-GCAAGCGUGa------AGCaGGauuau -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 21858 | 0.71 | 0.966504 |
Target: 5'- --cAGUGcUCGCACUUUGcCCUAAUAa -3' miRNA: 3'- gcuUCGCaAGCGUGAAGCaGGAUUAU- -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 12721 | 0.69 | 0.990842 |
Target: 5'- gGggGCGUggugCgGCGCgaCGUCCUGGa- -3' miRNA: 3'- gCuuCGCAa---G-CGUGaaGCAGGAUUau -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 21995 | 0.75 | 0.856681 |
Target: 5'- --cAGCGcUCGCACUUUGcCCUAAUAa -3' miRNA: 3'- gcuUCGCaAGCGUGAAGCaGGAUUAU- -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 91695 | 1.04 | 0.032098 |
Target: 5'- gCGAAGCGUUCGCACUUUGUCCUAAUAg -3' miRNA: 3'- -GCUUCGCAAGCGUGAAGCAGGAUUAU- -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 5808 | 1.08 | 0.017441 |
Target: 5'- gCGAAGCGUUCGCACUUCGUCCUAAUAg -3' miRNA: 3'- -GCUUCGCAAGCGUGAAGCAGGAUUAU- -5' |
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5489 | 3' | -48.4 | NC_001798.1 | + | 5670 | 1.08 | 0.017441 |
Target: 5'- gCGAAGCGUUCGCACUUCGUCCUAAUAg -3' miRNA: 3'- -GCUUCGCAAGCGUGAAGCAGGAUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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