miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 5' -53.4 NC_001798.1 + 116247 0.66 0.96133
Target:  5'- --cGCUGCUGCCgccccUCGUGuGGg-ACUGCg -3'
miRNA:   3'- cucUGACGAUGG-----AGUAC-CCgaUGACG- -5'
5491 5' -53.4 NC_001798.1 + 53549 0.66 0.96133
Target:  5'- -cGACUGCgaccccaGCCUgCAcGuGCUGCUGCg -3'
miRNA:   3'- cuCUGACGa------UGGA-GUaCcCGAUGACG- -5'
5491 5' -53.4 NC_001798.1 + 77530 0.66 0.953651
Target:  5'- cGAGGCUG--GgUUCggGGGCcUGCUGCa -3'
miRNA:   3'- -CUCUGACgaUgGAGuaCCCG-AUGACG- -5'
5491 5' -53.4 NC_001798.1 + 100432 0.67 0.945005
Target:  5'- -cGGC-GCUACUUCAUcuucggcggGGGCUACgUGUa -3'
miRNA:   3'- cuCUGaCGAUGGAGUA---------CCCGAUG-ACG- -5'
5491 5' -53.4 NC_001798.1 + 102306 0.67 0.945005
Target:  5'- -cGGCUGCUccACCUCGUGucGGCg---GCg -3'
miRNA:   3'- cuCUGACGA--UGGAGUAC--CCGaugaCG- -5'
5491 5' -53.4 NC_001798.1 + 68790 0.7 0.840228
Target:  5'- cGGugUGUgugGCCUCcUGGGgUccGCUGCa -3'
miRNA:   3'- cUCugACGa--UGGAGuACCCgA--UGACG- -5'
5491 5' -53.4 NC_001798.1 + 100844 0.7 0.840228
Target:  5'- cGGGGC-GCUugC-CGUgGGGCUGCUGg -3'
miRNA:   3'- -CUCUGaCGAugGaGUA-CCCGAUGACg -5'
5491 5' -53.4 NC_001798.1 + 118373 0.7 0.831734
Target:  5'- gGGGACUGau-UCUCAccugGGGCUcCUGCg -3'
miRNA:   3'- -CUCUGACgauGGAGUa---CCCGAuGACG- -5'
5491 5' -53.4 NC_001798.1 + 70401 0.7 0.823048
Target:  5'- gGAGACggcGCUcuuggccgagaACCUCcccGGGCUGCUGg -3'
miRNA:   3'- -CUCUGa--CGA-----------UGGAGua-CCCGAUGACg -5'
5491 5' -53.4 NC_001798.1 + 27164 0.71 0.777035
Target:  5'- aGGGGCUGCUGCgagCUCG-GGGCcGCggGCg -3'
miRNA:   3'- -CUCUGACGAUG---GAGUaCCCGaUGa-CG- -5'
5491 5' -53.4 NC_001798.1 + 109253 0.73 0.665485
Target:  5'- cGGGGCUGCUcGCCUCGUcgGGGU--UUGCg -3'
miRNA:   3'- -CUCUGACGA-UGGAGUA--CCCGauGACG- -5'
5491 5' -53.4 NC_001798.1 + 87142 0.75 0.560573
Target:  5'- uGGGCUaCUACCUgGggaucggGGGCUGCUGCc -3'
miRNA:   3'- cUCUGAcGAUGGAgUa------CCCGAUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.