miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 22360 0.67 0.566232
Target:  5'- -cGGGGCCgcgcauaauGCGGUUCCaCCUgggggcggaACCC-CGg -3'
miRNA:   3'- guCCCCGG---------UGCCAAGG-GGG---------UGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 34109 0.67 0.566232
Target:  5'- uGGGGGCggugggcgUACGGg--CCCgACCCGCGc -3'
miRNA:   3'- gUCCCCG--------GUGCCaagGGGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 24460 0.67 0.566232
Target:  5'- -cGGcGCCGCGGgggugCUCgCCGCCCugGg -3'
miRNA:   3'- guCCcCGGUGCCaa---GGG-GGUGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 122835 0.67 0.559549
Target:  5'- uCGGGGGCgGCGGcggcggcucgucccUCucagcgacgacauCCCCGCCCGCu -3'
miRNA:   3'- -GUCCCCGgUGCCa-------------AG-------------GGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 140016 0.67 0.556692
Target:  5'- --uGGGCCAgGGUgCCCUCACgCGCc -3'
miRNA:   3'- gucCCCGGUgCCAaGGGGGUGgGUGc -5'
5492 3' -63.2 NC_001798.1 + 40825 0.67 0.556692
Target:  5'- uGGGGGCCGCuGGUUCCgCguUUUugGg -3'
miRNA:   3'- gUCCCCGGUG-CCAAGGgGguGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 150675 0.67 0.537757
Target:  5'- ----cGCCGCGGcgucUUCgCCCACCCGCGc -3'
miRNA:   3'- gucccCGGUGCC----AAGgGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 59831 0.67 0.547198
Target:  5'- uGGGGcGCCGCGGUcgCCCgCGuCCgGCu -3'
miRNA:   3'- gUCCC-CGGUGCCAa-GGGgGU-GGgUGc -5'
5492 3' -63.2 NC_001798.1 + 1484 0.67 0.547198
Target:  5'- -cGGGcGCCAUGGcgUCgCCCgCGCCCgagGCGg -3'
miRNA:   3'- guCCC-CGGUGCCa-AG-GGG-GUGGG---UGC- -5'
5492 3' -63.2 NC_001798.1 + 30181 0.67 0.547198
Target:  5'- aCGGGGGaCACGGcgCgggggUCCCGCCuCACGc -3'
miRNA:   3'- -GUCCCCgGUGCCaaG-----GGGGUGG-GUGC- -5'
5492 3' -63.2 NC_001798.1 + 5586 0.67 0.547198
Target:  5'- aAGGGGCCgGCGaGgUCgCCCCGuuggUCCGCGg -3'
miRNA:   3'- gUCCCCGG-UGC-CaAG-GGGGU----GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 150045 0.68 0.492397
Target:  5'- -cGGGGCCcggcGCGGcgccgcccucuuggCCCCCACCCccugggggGCGa -3'
miRNA:   3'- guCCCCGG----UGCCaa------------GGGGGUGGG--------UGC- -5'
5492 3' -63.2 NC_001798.1 + 154314 0.68 0.498774
Target:  5'- aAGGGGCgGCGGcaggacggggaCUCCCGCCC-CGc -3'
miRNA:   3'- gUCCCCGgUGCCaa---------GGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 50273 0.68 0.500604
Target:  5'- uGGGGGaCGUGGagUCCCCCuccccgggaaugACCCACGa -3'
miRNA:   3'- gUCCCCgGUGCCa-AGGGGG------------UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 73265 0.68 0.500604
Target:  5'- -uGGaGGCCcaagaugccgGCGGUagcaCCCCCgaACCCACGa -3'
miRNA:   3'- guCC-CCGG----------UGCCAa---GGGGG--UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 147178 0.68 0.500604
Target:  5'- -cGGcGCCggGCGGaaggcgUCCCCCGCCCGgCGg -3'
miRNA:   3'- guCCcCGG--UGCCa-----AGGGGGUGGGU-GC- -5'
5492 3' -63.2 NC_001798.1 + 149073 0.68 0.500604
Target:  5'- -cGGGGCCGUGuccgUCCCCCcccCCCACu -3'
miRNA:   3'- guCCCCGGUGCca--AGGGGGu--GGGUGc -5'
5492 3' -63.2 NC_001798.1 + 66628 0.68 0.500604
Target:  5'- --cGGGCuCGCGGUcgacggcgUCCCCCAgaaaCCGCGc -3'
miRNA:   3'- gucCCCG-GUGCCA--------AGGGGGUg---GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 85933 0.68 0.507027
Target:  5'- gCGGGGGCggagacagcugcugCACGcGcgCCgCCGCCCGCa -3'
miRNA:   3'- -GUCCCCG--------------GUGC-CaaGGgGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 17093 0.68 0.49149
Target:  5'- -cGGGuCCACGccggacgauuGUUCCCggCCGCCCGCGa -3'
miRNA:   3'- guCCCcGGUGC----------CAAGGG--GGUGGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.