Results 61 - 80 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5492 | 3' | -63.2 | NC_001798.1 | + | 127941 | 0.68 | 0.455842 |
Target: 5'- -cGGGGCCcCGGgcgaaaaggCCCgGCCCGCGu -3' miRNA: 3'- guCCCCGGuGCCaag------GGGgUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 28796 | 0.68 | 0.455842 |
Target: 5'- -cGGcGGCgCGCGGgUCCUCCGCCgcCGCGg -3' miRNA: 3'- guCC-CCG-GUGCCaAGGGGGUGG--GUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 12206 | 0.68 | 0.482453 |
Target: 5'- -uGGGGCCccACGG--CCCCggCAUCCACGa -3' miRNA: 3'- guCCCCGG--UGCCaaGGGG--GUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 154519 | 0.68 | 0.482453 |
Target: 5'- -cGGGGCUgccuucccGCGGgcgCCCCCGcgcggcuuuuuuCCCGCGc -3' miRNA: 3'- guCCCCGG--------UGCCaa-GGGGGU------------GGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 84550 | 0.68 | 0.509791 |
Target: 5'- cCGGGcaaGGgUGCGcGUUCCCCCACCCcCu -3' miRNA: 3'- -GUCC---CCgGUGC-CAAGGGGGUGGGuGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 85933 | 0.68 | 0.507027 |
Target: 5'- gCGGGGGCggagacagcugcugCACGcGcgCCgCCGCCCGCa -3' miRNA: 3'- -GUCCCCG--------------GUGC-CaaGGgGGUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 66628 | 0.68 | 0.500604 |
Target: 5'- --cGGGCuCGCGGUcgacggcgUCCCCCAgaaaCCGCGc -3' miRNA: 3'- gucCCCG-GUGCCA--------AGGGGGUg---GGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 149073 | 0.68 | 0.500604 |
Target: 5'- -cGGGGCCGUGuccgUCCCCCcccCCCACu -3' miRNA: 3'- guCCCCGGUGCca--AGGGGGu--GGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 147178 | 0.68 | 0.500604 |
Target: 5'- -cGGcGCCggGCGGaaggcgUCCCCCGCCCGgCGg -3' miRNA: 3'- guCCcCGG--UGCCa-----AGGGGGUGGGU-GC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 73265 | 0.68 | 0.500604 |
Target: 5'- -uGGaGGCCcaagaugccgGCGGUagcaCCCCCgaACCCACGa -3' miRNA: 3'- guCC-CCGG----------UGCCAa---GGGGG--UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 50273 | 0.68 | 0.500604 |
Target: 5'- uGGGGGaCGUGGagUCCCCCuccccgggaaugACCCACGa -3' miRNA: 3'- gUCCCCgGUGCCa-AGGGGG------------UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 154314 | 0.68 | 0.498774 |
Target: 5'- aAGGGGCgGCGGcaggacggggaCUCCCGCCC-CGc -3' miRNA: 3'- gUCCCCGgUGCCaa---------GGGGGUGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 150045 | 0.68 | 0.492397 |
Target: 5'- -cGGGGCCcggcGCGGcgccgcccucuuggCCCCCACCCccugggggGCGa -3' miRNA: 3'- guCCCCGG----UGCCaa------------GGGGGUGGG--------UGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 17093 | 0.68 | 0.49149 |
Target: 5'- -cGGGuCCACGccggacgauuGUUCCCggCCGCCCGCGa -3' miRNA: 3'- guCCCcGGUGC----------CAAGGG--GGUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 111594 | 0.68 | 0.49149 |
Target: 5'- gGGGGGCCcgGCGGggcggCCUCCuggaGCCC-CGg -3' miRNA: 3'- gUCCCCGG--UGCCaa---GGGGG----UGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 84422 | 0.69 | 0.447149 |
Target: 5'- gUAGGGGCC-CGac-UCCCCACCCcCGc -3' miRNA: 3'- -GUCCCCGGuGCcaaGGGGGUGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 93500 | 0.69 | 0.447149 |
Target: 5'- gAGGGGCgcccCACGGcgCCCCUcgucggcggaACCCAgGa -3' miRNA: 3'- gUCCCCG----GUGCCaaGGGGG----------UGGGUgC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 150228 | 0.69 | 0.447149 |
Target: 5'- gCGGGGGaCCcCGGgUCCUCCcUCCGCGc -3' miRNA: 3'- -GUCCCC-GGuGCCaAGGGGGuGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 12903 | 0.69 | 0.447149 |
Target: 5'- aCGGGGGCUugGGg-CCgugCCACCCgGCGa -3' miRNA: 3'- -GUCCCCGGugCCaaGGg--GGUGGG-UGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 150873 | 0.69 | 0.447149 |
Target: 5'- uGGGaGGuuCCGCGGgucgCCCCCGCaCCGCc -3' miRNA: 3'- gUCC-CC--GGUGCCaa--GGGGGUG-GGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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