miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 153839 0.7 0.365673
Target:  5'- -cGGGGCCucCGGcgccuucCCCCCGCCCuCGc -3'
miRNA:   3'- guCCCCGGu-GCCaa-----GGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 136831 0.7 0.358107
Target:  5'- uGGcGGGCCACGa--CCCCCAaCCACGc -3'
miRNA:   3'- gUC-CCCGGUGCcaaGGGGGUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 3891 0.7 0.365673
Target:  5'- cCGGGGGCgGgGGgccggCCCCgGgCCACGg -3'
miRNA:   3'- -GUCCCCGgUgCCaa---GGGGgUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 10673 0.7 0.365673
Target:  5'- gGGGGGCCACaG---CgCCACCCACGa -3'
miRNA:   3'- gUCCCCGGUGcCaagGgGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 79057 0.69 0.413328
Target:  5'- -cGGGGCUGCGGgcCCagCCgGCCUACGa -3'
miRNA:   3'- guCCCCGGUGCCaaGG--GGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 93500 0.69 0.447149
Target:  5'- gAGGGGCgcccCACGGcgCCCCUcgucggcggaACCCAgGa -3'
miRNA:   3'- gUCCCCG----GUGCCaaGGGGG----------UGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 150873 0.69 0.447149
Target:  5'- uGGGaGGuuCCGCGGgucgCCCCCGCaCCGCc -3'
miRNA:   3'- gUCC-CC--GGUGCCaa--GGGGGUG-GGUGc -5'
5492 3' -63.2 NC_001798.1 + 150228 0.69 0.447149
Target:  5'- gCGGGGGaCCcCGGgUCCUCCcUCCGCGc -3'
miRNA:   3'- -GUCCCC-GGuGCCaAGGGGGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 12903 0.69 0.447149
Target:  5'- aCGGGGGCUugGGg-CCgugCCACCCgGCGa -3'
miRNA:   3'- -GUCCCCGGugCCaaGGg--GGUGGG-UGC- -5'
5492 3' -63.2 NC_001798.1 + 123944 0.69 0.447149
Target:  5'- cCGGGGGCCugGuGgcaccUCCCCgGCggCCGCa -3'
miRNA:   3'- -GUCCCCGGugC-Ca----AGGGGgUG--GGUGc -5'
5492 3' -63.2 NC_001798.1 + 30851 0.69 0.405123
Target:  5'- gGGGGGacaCACGGUccgcgCCCUguCGCCCACc -3'
miRNA:   3'- gUCCCCg--GUGCCAa----GGGG--GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 150346 0.69 0.405123
Target:  5'- -cGGGGCgCGCGGUgcgCgUCCACCgGCa -3'
miRNA:   3'- guCCCCG-GUGCCAa--GgGGGUGGgUGc -5'
5492 3' -63.2 NC_001798.1 + 503 0.69 0.405123
Target:  5'- cCGGGGGCUuccccCGccccUCCCCCcgcGCCCGCGg -3'
miRNA:   3'- -GUCCCCGGu----GCca--AGGGGG---UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 134954 0.69 0.413328
Target:  5'- gCGGGGcGCCGCGG--CCaCCCAUgCCGCGu -3'
miRNA:   3'- -GUCCC-CGGUGCCaaGG-GGGUG-GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 1987 0.69 0.405123
Target:  5'- uCGGGGG-CGCGGUccagUUgCCCGCCCAgGc -3'
miRNA:   3'- -GUCCCCgGUGCCA----AGgGGGUGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 146420 0.69 0.404308
Target:  5'- -cGGGGCgagccgggcagagUGCGGagCCCCCggaGCCCGCGg -3'
miRNA:   3'- guCCCCG-------------GUGCCaaGGGGG---UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 143816 0.69 0.41581
Target:  5'- cCGGGcGGCgCGCGGccagccguuggaccaCCCCGCCCACa -3'
miRNA:   3'- -GUCC-CCG-GUGCCaag------------GGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 84422 0.69 0.447149
Target:  5'- gUAGGGGCC-CGac-UCCCCACCCcCGc -3'
miRNA:   3'- -GUCCCCGGuGCcaaGGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 29410 0.69 0.447149
Target:  5'- gCGGGGcGCCGgGGggaCUCCCAUCUGCGu -3'
miRNA:   3'- -GUCCC-CGGUgCCaa-GGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 86088 0.69 0.433434
Target:  5'- uCGGGGccccggcugcgcgccGCCGCGGacgCCCgCCGCgCCGCGg -3'
miRNA:   3'- -GUCCC---------------CGGUGCCaa-GGG-GGUG-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.