miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 1987 0.69 0.405123
Target:  5'- uCGGGGG-CGCGGUccagUUgCCCGCCCAgGc -3'
miRNA:   3'- -GUCCCCgGUGCCA----AGgGGGUGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 134163 0.69 0.438549
Target:  5'- -cGGGGCCgucGCGG--CCgCCCGCgCCGCGa -3'
miRNA:   3'- guCCCCGG---UGCCaaGG-GGGUG-GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 29410 0.69 0.447149
Target:  5'- gCGGGGcGCCGgGGggaCUCCCAUCUGCGu -3'
miRNA:   3'- -GUCCC-CGGUgCCaa-GGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 143816 0.69 0.41581
Target:  5'- cCGGGcGGCgCGCGGccagccguuggaccaCCCCGCCCACa -3'
miRNA:   3'- -GUCC-CCG-GUGCCaag------------GGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 150346 0.69 0.405123
Target:  5'- -cGGGGCgCGCGGUgcgCgUCCACCgGCa -3'
miRNA:   3'- guCCCCG-GUGCCAa--GgGGGUGGgUGc -5'
5492 3' -63.2 NC_001798.1 + 503 0.69 0.405123
Target:  5'- cCGGGGGCUuccccCGccccUCCCCCcgcGCCCGCGg -3'
miRNA:   3'- -GUCCCCGGu----GCca--AGGGGG---UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 30851 0.69 0.405123
Target:  5'- gGGGGGacaCACGGUccgcgCCCUguCGCCCACc -3'
miRNA:   3'- gUCCCCg--GUGCCAa----GGGG--GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 84550 0.68 0.509791
Target:  5'- cCGGGcaaGGgUGCGcGUUCCCCCACCCcCu -3'
miRNA:   3'- -GUCC---CCgGUGC-CAAGGGGGUGGGuGc -5'
5492 3' -63.2 NC_001798.1 + 85933 0.68 0.507027
Target:  5'- gCGGGGGCggagacagcugcugCACGcGcgCCgCCGCCCGCa -3'
miRNA:   3'- -GUCCCCG--------------GUGC-CaaGGgGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 66628 0.68 0.500604
Target:  5'- --cGGGCuCGCGGUcgacggcgUCCCCCAgaaaCCGCGc -3'
miRNA:   3'- gucCCCG-GUGCCA--------AGGGGGUg---GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 149073 0.68 0.500604
Target:  5'- -cGGGGCCGUGuccgUCCCCCcccCCCACu -3'
miRNA:   3'- guCCCCGGUGCca--AGGGGGu--GGGUGc -5'
5492 3' -63.2 NC_001798.1 + 147178 0.68 0.500604
Target:  5'- -cGGcGCCggGCGGaaggcgUCCCCCGCCCGgCGg -3'
miRNA:   3'- guCCcCGG--UGCCa-----AGGGGGUGGGU-GC- -5'
5492 3' -63.2 NC_001798.1 + 28796 0.68 0.455842
Target:  5'- -cGGcGGCgCGCGGgUCCUCCGCCgcCGCGg -3'
miRNA:   3'- guCC-CCG-GUGCCaAGGGGGUGG--GUGC- -5'
5492 3' -63.2 NC_001798.1 + 127941 0.68 0.455842
Target:  5'- -cGGGGCCcCGGgcgaaaaggCCCgGCCCGCGu -3'
miRNA:   3'- guCCCCGGuGCCaag------GGGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 73265 0.68 0.500604
Target:  5'- -uGGaGGCCcaagaugccgGCGGUagcaCCCCCgaACCCACGa -3'
miRNA:   3'- guCC-CCGG----------UGCCAa---GGGGG--UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 50273 0.68 0.500604
Target:  5'- uGGGGGaCGUGGagUCCCCCuccccgggaaugACCCACGa -3'
miRNA:   3'- gUCCCCgGUGCCa-AGGGGG------------UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 154314 0.68 0.498774
Target:  5'- aAGGGGCgGCGGcaggacggggaCUCCCGCCC-CGc -3'
miRNA:   3'- gUCCCCGgUGCCaa---------GGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 150045 0.68 0.492397
Target:  5'- -cGGGGCCcggcGCGGcgccgcccucuuggCCCCCACCCccugggggGCGa -3'
miRNA:   3'- guCCCCGG----UGCCaa------------GGGGGUGGG--------UGC- -5'
5492 3' -63.2 NC_001798.1 + 111594 0.68 0.49149
Target:  5'- gGGGGGCCcgGCGGggcggCCUCCuggaGCCC-CGg -3'
miRNA:   3'- gUCCCCGG--UGCCaa---GGGGG----UGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 154519 0.68 0.482453
Target:  5'- -cGGGGCUgccuucccGCGGgcgCCCCCGcgcggcuuuuuuCCCGCGc -3'
miRNA:   3'- guCCCCGG--------UGCCaa-GGGGGU------------GGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.