Results 81 - 100 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5492 | 3' | -63.2 | NC_001798.1 | + | 4907 | 0.68 | 0.473498 |
Target: 5'- -cGGGGCCGcCGGUcgUCUCCGCC-GCGg -3' miRNA: 3'- guCCCCGGU-GCCAa-GGGGGUGGgUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 25085 | 0.68 | 0.473498 |
Target: 5'- cCAGGGcGCCgccggGCGGcgCCCCgCGCCCccCGa -3' miRNA: 3'- -GUCCC-CGG-----UGCCaaGGGG-GUGGGu-GC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 117038 | 0.68 | 0.473498 |
Target: 5'- uGGGGGCCAacuacuucUCCUCCAUCCGCc -3' miRNA: 3'- gUCCCCGGUgcca----AGGGGGUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 106744 | 0.68 | 0.470827 |
Target: 5'- aGGGGGCCucCGGagCCCgcggggauccggagCUGCCCACGc -3' miRNA: 3'- gUCCCCGGu-GCCaaGGG--------------GGUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 137921 | 0.68 | 0.464626 |
Target: 5'- cCGGGcGGcCCGCGccUCCCCCGgCCGCc -3' miRNA: 3'- -GUCC-CC-GGUGCcaAGGGGGUgGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 74661 | 0.68 | 0.464626 |
Target: 5'- gGGGGGCCuCGGg---CCCACCCgACa -3' miRNA: 3'- gUCCCCGGuGCCaaggGGGUGGG-UGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 127941 | 0.68 | 0.455842 |
Target: 5'- -cGGGGCCcCGGgcgaaaaggCCCgGCCCGCGu -3' miRNA: 3'- guCCCCGGuGCCaag------GGGgUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 28796 | 0.68 | 0.455842 |
Target: 5'- -cGGcGGCgCGCGGgUCCUCCGCCgcCGCGg -3' miRNA: 3'- guCC-CCG-GUGCCaAGGGGGUGG--GUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 181 | 0.68 | 0.482453 |
Target: 5'- -cGGGGCUgccuucccGCGGgcgCCCCCGcgcggcuuuuuuCCCGCGc -3' miRNA: 3'- guCCCCGG--------UGCCaa-GGGGGU------------GGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 2605 | 0.68 | 0.482453 |
Target: 5'- uCGGGGGgCGCGGggcgCCgCCCggcggcGCCCugGc -3' miRNA: 3'- -GUCCCCgGUGCCaa--GG-GGG------UGGGugC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 12206 | 0.68 | 0.482453 |
Target: 5'- -uGGGGCCccACGG--CCCCggCAUCCACGa -3' miRNA: 3'- guCCCCGG--UGCCaaGGGG--GUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 34109 | 0.67 | 0.566232 |
Target: 5'- uGGGGGCggugggcgUACGGg--CCCgACCCGCGc -3' miRNA: 3'- gUCCCCG--------GUGCCaagGGGgUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 24460 | 0.67 | 0.566232 |
Target: 5'- -cGGcGCCGCGGgggugCUCgCCGCCCugGg -3' miRNA: 3'- guCCcCGGUGCCaa---GGG-GGUGGGugC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 122835 | 0.67 | 0.559549 |
Target: 5'- uCGGGGGCgGCGGcggcggcucgucccUCucagcgacgacauCCCCGCCCGCu -3' miRNA: 3'- -GUCCCCGgUGCCa-------------AG-------------GGGGUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 140016 | 0.67 | 0.556692 |
Target: 5'- --uGGGCCAgGGUgCCCUCACgCGCc -3' miRNA: 3'- gucCCCGGUgCCAaGGGGGUGgGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 40825 | 0.67 | 0.556692 |
Target: 5'- uGGGGGCCGCuGGUUCCgCguUUUugGg -3' miRNA: 3'- gUCCCCGGUG-CCAAGGgGguGGGugC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 5586 | 0.67 | 0.547198 |
Target: 5'- aAGGGGCCgGCGaGgUCgCCCCGuuggUCCGCGg -3' miRNA: 3'- gUCCCCGG-UGC-CaAG-GGGGU----GGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 7444 | 0.67 | 0.519049 |
Target: 5'- cCAGGGaGCCuagacccccACGGgaaCCCCgcgcaACCCGCGg -3' miRNA: 3'- -GUCCC-CGG---------UGCCaagGGGG-----UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 121075 | 0.67 | 0.516264 |
Target: 5'- --cGGGCCccgaggacgcgcacACGcacCCCCCACCCACGc -3' miRNA: 3'- gucCCCGG--------------UGCcaaGGGGGUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 134986 | 0.67 | 0.516264 |
Target: 5'- uGGGGGCCuggcccGCGGUgggcgccagggucgUCCUgCcCCCGCGg -3' miRNA: 3'- gUCCCCGG------UGCCA--------------AGGGgGuGGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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