Results 101 - 120 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5492 | 3' | -63.2 | NC_001798.1 | + | 34109 | 0.67 | 0.566232 |
Target: 5'- uGGGGGCggugggcgUACGGg--CCCgACCCGCGc -3' miRNA: 3'- gUCCCCG--------GUGCCaagGGGgUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 23577 | 0.67 | 0.566232 |
Target: 5'- cCGGGGGCgGCGccccggCCgagCCCGCCCAgGg -3' miRNA: 3'- -GUCCCCGgUGCcaa---GG---GGGUGGGUgC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 153684 | 0.67 | 0.537757 |
Target: 5'- -cGGGGaCGCGGgggCCgCCGCCgGCGc -3' miRNA: 3'- guCCCCgGUGCCaa-GGgGGUGGgUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 22360 | 0.67 | 0.566232 |
Target: 5'- -cGGGGCCgcgcauaauGCGGUUCCaCCUgggggcggaACCC-CGg -3' miRNA: 3'- guCCCCGG---------UGCCAAGG-GGG---------UGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 31873 | 0.67 | 0.566232 |
Target: 5'- aGGGGGCgGCGG----CCCGCCCcCGg -3' miRNA: 3'- gUCCCCGgUGCCaaggGGGUGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 69848 | 0.67 | 0.537757 |
Target: 5'- --cGGGCCGCcgucGGccgCCCCCcCCCACa -3' miRNA: 3'- gucCCCGGUG----CCaa-GGGGGuGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 136002 | 0.67 | 0.519049 |
Target: 5'- cCGGGGGCgGggaguCGGUcggcgUCCCCguggaucugUACCCGCGg -3' miRNA: 3'- -GUCCCCGgU-----GCCA-----AGGGG---------GUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 78975 | 0.67 | 0.528372 |
Target: 5'- gGGGGcGCCugGaagUCCCCCGagggguUCCGCGc -3' miRNA: 3'- gUCCC-CGGugCca-AGGGGGU------GGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 102064 | 0.67 | 0.528372 |
Target: 5'- uGGGGGUgGUGGUagggCCCCACCgGCGg -3' miRNA: 3'- gUCCCCGgUGCCAag--GGGGUGGgUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 134986 | 0.67 | 0.516264 |
Target: 5'- uGGGGGCCuggcccGCGGUgggcgccagggucgUCCUgCcCCCGCGg -3' miRNA: 3'- gUCCCCGG------UGCCA--------------AGGGgGuGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 121075 | 0.67 | 0.516264 |
Target: 5'- --cGGGCCccgaggacgcgcacACGcacCCCCCACCCACGc -3' miRNA: 3'- gucCCCGG--------------UGCcaaGGGGGUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 7444 | 0.67 | 0.519049 |
Target: 5'- cCAGGGaGCCuagacccccACGGgaaCCCCgcgcaACCCGCGg -3' miRNA: 3'- -GUCCC-CGG---------UGCCaagGGGG-----UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 54658 | 0.67 | 0.519049 |
Target: 5'- gCAGcGGccggcaGCCGCGGcgCgCCCGCUCGCGg -3' miRNA: 3'- -GUC-CC------CGGUGCCaaGgGGGUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 152478 | 0.67 | 0.528372 |
Target: 5'- aAGGGGCggcauuUACGaUUCCCCCAauagCCGCGc -3' miRNA: 3'- gUCCCCG------GUGCcAAGGGGGUg---GGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 98492 | 0.67 | 0.537757 |
Target: 5'- cUAGcGGGCgGCGGgagcgacgcgCCCCCguagGCCCGCc -3' miRNA: 3'- -GUC-CCCGgUGCCaa--------GGGGG----UGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 91777 | 0.67 | 0.537757 |
Target: 5'- aGGGcGGCCACGc--CCCCUGCCgAUGa -3' miRNA: 3'- gUCC-CCGGUGCcaaGGGGGUGGgUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 105197 | 0.67 | 0.537757 |
Target: 5'- -cGGGGcCCGCGGUgggcgacggcgcUgCCCCGUCCGCa -3' miRNA: 3'- guCCCC-GGUGCCA------------AgGGGGUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 147912 | 0.67 | 0.519049 |
Target: 5'- gGGGGGCaggCGCGGgucgggCCCguaCGCCCACc -3' miRNA: 3'- gUCCCCG---GUGCCaa----GGGg--GUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 32573 | 0.67 | 0.537757 |
Target: 5'- --cGGGCCGCGG--CCCCCGCguggagccgCCGCa -3' miRNA: 3'- gucCCCGGUGCCaaGGGGGUG---------GGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 33823 | 0.67 | 0.519049 |
Target: 5'- aGGGGGCuCGCGcGUUCgCaacaCCACaCCACa -3' miRNA: 3'- gUCCCCG-GUGC-CAAG-Gg---GGUG-GGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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