miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 123944 0.69 0.447149
Target:  5'- cCGGGGGCCugGuGgcaccUCCCCgGCggCCGCa -3'
miRNA:   3'- -GUCCCCGGugC-Ca----AGGGGgUG--GGUGc -5'
5492 3' -63.2 NC_001798.1 + 12903 0.69 0.447149
Target:  5'- aCGGGGGCUugGGg-CCgugCCACCCgGCGa -3'
miRNA:   3'- -GUCCCCGGugCCaaGGg--GGUGGG-UGC- -5'
5492 3' -63.2 NC_001798.1 + 150228 0.69 0.447149
Target:  5'- gCGGGGGaCCcCGGgUCCUCCcUCCGCGc -3'
miRNA:   3'- -GUCCCC-GGuGCCaAGGGGGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 93500 0.69 0.447149
Target:  5'- gAGGGGCgcccCACGGcgCCCCUcgucggcggaACCCAgGa -3'
miRNA:   3'- gUCCCCG----GUGCCaaGGGGG----------UGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 84422 0.69 0.447149
Target:  5'- gUAGGGGCC-CGac-UCCCCACCCcCGc -3'
miRNA:   3'- -GUCCCCGGuGCcaaGGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 29410 0.69 0.447149
Target:  5'- gCGGGGcGCCGgGGggaCUCCCAUCUGCGu -3'
miRNA:   3'- -GUCCC-CGGUgCCaa-GGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 150873 0.69 0.447149
Target:  5'- uGGGaGGuuCCGCGGgucgCCCCCGCaCCGCc -3'
miRNA:   3'- gUCC-CC--GGUGCCaa--GGGGGUG-GGUGc -5'
5492 3' -63.2 NC_001798.1 + 28796 0.68 0.455842
Target:  5'- -cGGcGGCgCGCGGgUCCUCCGCCgcCGCGg -3'
miRNA:   3'- guCC-CCG-GUGCCaAGGGGGUGG--GUGC- -5'
5492 3' -63.2 NC_001798.1 + 127941 0.68 0.455842
Target:  5'- -cGGGGCCcCGGgcgaaaaggCCCgGCCCGCGu -3'
miRNA:   3'- guCCCCGGuGCCaag------GGGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 74661 0.68 0.464626
Target:  5'- gGGGGGCCuCGGg---CCCACCCgACa -3'
miRNA:   3'- gUCCCCGGuGCCaaggGGGUGGG-UGc -5'
5492 3' -63.2 NC_001798.1 + 137921 0.68 0.464626
Target:  5'- cCGGGcGGcCCGCGccUCCCCCGgCCGCc -3'
miRNA:   3'- -GUCC-CC-GGUGCcaAGGGGGUgGGUGc -5'
5492 3' -63.2 NC_001798.1 + 106744 0.68 0.470827
Target:  5'- aGGGGGCCucCGGagCCCgcggggauccggagCUGCCCACGc -3'
miRNA:   3'- gUCCCCGGu-GCCaaGGG--------------GGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 117038 0.68 0.473498
Target:  5'- uGGGGGCCAacuacuucUCCUCCAUCCGCc -3'
miRNA:   3'- gUCCCCGGUgcca----AGGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 4907 0.68 0.473498
Target:  5'- -cGGGGCCGcCGGUcgUCUCCGCC-GCGg -3'
miRNA:   3'- guCCCCGGU-GCCAa-GGGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 25085 0.68 0.473498
Target:  5'- cCAGGGcGCCgccggGCGGcgCCCCgCGCCCccCGa -3'
miRNA:   3'- -GUCCC-CGG-----UGCCaaGGGG-GUGGGu-GC- -5'
5492 3' -63.2 NC_001798.1 + 82316 0.68 0.473498
Target:  5'- -cGGaGGCC-CGGUUgcccgccgcCCCCCACCC-Ca -3'
miRNA:   3'- guCC-CCGGuGCCAA---------GGGGGUGGGuGc -5'
5492 3' -63.2 NC_001798.1 + 154519 0.68 0.482453
Target:  5'- -cGGGGCUgccuucccGCGGgcgCCCCCGcgcggcuuuuuuCCCGCGc -3'
miRNA:   3'- guCCCCGG--------UGCCaa-GGGGGU------------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 12206 0.68 0.482453
Target:  5'- -uGGGGCCccACGG--CCCCggCAUCCACGa -3'
miRNA:   3'- guCCCCGG--UGCCaaGGGG--GUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 2605 0.68 0.482453
Target:  5'- uCGGGGGgCGCGGggcgCCgCCCggcggcGCCCugGc -3'
miRNA:   3'- -GUCCCCgGUGCCaa--GG-GGG------UGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 181 0.68 0.482453
Target:  5'- -cGGGGCUgccuucccGCGGgcgCCCCCGcgcggcuuuuuuCCCGCGc -3'
miRNA:   3'- guCCCCGG--------UGCCaa-GGGGGU------------GGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.