miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 111594 0.68 0.49149
Target:  5'- gGGGGGCCcgGCGGggcggCCUCCuggaGCCC-CGg -3'
miRNA:   3'- gUCCCCGG--UGCCaa---GGGGG----UGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 17093 0.68 0.49149
Target:  5'- -cGGGuCCACGccggacgauuGUUCCCggCCGCCCGCGa -3'
miRNA:   3'- guCCCcGGUGC----------CAAGGG--GGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 150045 0.68 0.492397
Target:  5'- -cGGGGCCcggcGCGGcgccgcccucuuggCCCCCACCCccugggggGCGa -3'
miRNA:   3'- guCCCCGG----UGCCaa------------GGGGGUGGG--------UGC- -5'
5492 3' -63.2 NC_001798.1 + 154314 0.68 0.498774
Target:  5'- aAGGGGCgGCGGcaggacggggaCUCCCGCCC-CGc -3'
miRNA:   3'- gUCCCCGgUGCCaa---------GGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 50273 0.68 0.500604
Target:  5'- uGGGGGaCGUGGagUCCCCCuccccgggaaugACCCACGa -3'
miRNA:   3'- gUCCCCgGUGCCa-AGGGGG------------UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 66628 0.68 0.500604
Target:  5'- --cGGGCuCGCGGUcgacggcgUCCCCCAgaaaCCGCGc -3'
miRNA:   3'- gucCCCG-GUGCCA--------AGGGGGUg---GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 149073 0.68 0.500604
Target:  5'- -cGGGGCCGUGuccgUCCCCCcccCCCACu -3'
miRNA:   3'- guCCCCGGUGCca--AGGGGGu--GGGUGc -5'
5492 3' -63.2 NC_001798.1 + 147178 0.68 0.500604
Target:  5'- -cGGcGCCggGCGGaaggcgUCCCCCGCCCGgCGg -3'
miRNA:   3'- guCCcCGG--UGCCa-----AGGGGGUGGGU-GC- -5'
5492 3' -63.2 NC_001798.1 + 73265 0.68 0.500604
Target:  5'- -uGGaGGCCcaagaugccgGCGGUagcaCCCCCgaACCCACGa -3'
miRNA:   3'- guCC-CCGG----------UGCCAa---GGGGG--UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 85933 0.68 0.507027
Target:  5'- gCGGGGGCggagacagcugcugCACGcGcgCCgCCGCCCGCa -3'
miRNA:   3'- -GUCCCCG--------------GUGC-CaaGGgGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 84550 0.68 0.509791
Target:  5'- cCGGGcaaGGgUGCGcGUUCCCCCACCCcCu -3'
miRNA:   3'- -GUCC---CCgGUGC-CAAGGGGGUGGGuGc -5'
5492 3' -63.2 NC_001798.1 + 134986 0.67 0.516264
Target:  5'- uGGGGGCCuggcccGCGGUgggcgccagggucgUCCUgCcCCCGCGg -3'
miRNA:   3'- gUCCCCGG------UGCCA--------------AGGGgGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 121075 0.67 0.516264
Target:  5'- --cGGGCCccgaggacgcgcacACGcacCCCCCACCCACGc -3'
miRNA:   3'- gucCCCGG--------------UGCcaaGGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 136002 0.67 0.519049
Target:  5'- cCGGGGGCgGggaguCGGUcggcgUCCCCguggaucugUACCCGCGg -3'
miRNA:   3'- -GUCCCCGgU-----GCCA-----AGGGG---------GUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 147912 0.67 0.519049
Target:  5'- gGGGGGCaggCGCGGgucgggCCCguaCGCCCACc -3'
miRNA:   3'- gUCCCCG---GUGCCaa----GGGg--GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 54658 0.67 0.519049
Target:  5'- gCAGcGGccggcaGCCGCGGcgCgCCCGCUCGCGg -3'
miRNA:   3'- -GUC-CC------CGGUGCCaaGgGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 7444 0.67 0.519049
Target:  5'- cCAGGGaGCCuagacccccACGGgaaCCCCgcgcaACCCGCGg -3'
miRNA:   3'- -GUCCC-CGG---------UGCCaagGGGG-----UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 33823 0.67 0.519049
Target:  5'- aGGGGGCuCGCGcGUUCgCaacaCCACaCCACa -3'
miRNA:   3'- gUCCCCG-GUGC-CAAG-Gg---GGUG-GGUGc -5'
5492 3' -63.2 NC_001798.1 + 78975 0.67 0.528372
Target:  5'- gGGGGcGCCugGaagUCCCCCGagggguUCCGCGc -3'
miRNA:   3'- gUCCC-CGGugCca-AGGGGGU------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 102064 0.67 0.528372
Target:  5'- uGGGGGUgGUGGUagggCCCCACCgGCGg -3'
miRNA:   3'- gUCCCCGgUGCCAag--GGGGUGGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.