Results 81 - 100 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5492 | 3' | -63.2 | NC_001798.1 | + | 12903 | 0.69 | 0.447149 |
Target: 5'- aCGGGGGCUugGGg-CCgugCCACCCgGCGa -3' miRNA: 3'- -GUCCCCGGugCCaaGGg--GGUGGG-UGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 123944 | 0.69 | 0.447149 |
Target: 5'- cCGGGGGCCugGuGgcaccUCCCCgGCggCCGCa -3' miRNA: 3'- -GUCCCCGGugC-Ca----AGGGGgUG--GGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 134163 | 0.69 | 0.438549 |
Target: 5'- -cGGGGCCgucGCGG--CCgCCCGCgCCGCGa -3' miRNA: 3'- guCCCCGG---UGCCaaGG-GGGUG-GGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 61036 | 0.69 | 0.438549 |
Target: 5'- gGGGGGCCGgGGga-CCCgAgCCACa -3' miRNA: 3'- gUCCCCGGUgCCaagGGGgUgGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 23797 | 0.69 | 0.438549 |
Target: 5'- gCGGGGaGCCGuggccCGGggccggcCCCCCGCCCcCGg -3' miRNA: 3'- -GUCCC-CGGU-----GCCaa-----GGGGGUGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 86088 | 0.69 | 0.433434 |
Target: 5'- uCGGGGccccggcugcgcgccGCCGCGGacgCCCgCCGCgCCGCGg -3' miRNA: 3'- -GUCCC---------------CGGUGCCaa-GGG-GGUG-GGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 43335 | 0.69 | 0.430043 |
Target: 5'- gGGGGGCgGCaGUgCCgCCC-CCCGCGu -3' miRNA: 3'- gUCCCCGgUGcCAaGG-GGGuGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 31164 | 0.69 | 0.421636 |
Target: 5'- gCGGGGGCgaccCGCGGaaCCUCCcaGCCCGCc -3' miRNA: 3'- -GUCCCCG----GUGCCaaGGGGG--UGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 2099 | 0.69 | 0.421636 |
Target: 5'- gGGGGGCC-CG---CCCCCggcgcgGCCCGCGg -3' miRNA: 3'- gUCCCCGGuGCcaaGGGGG------UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 143816 | 0.69 | 0.41581 |
Target: 5'- cCGGGcGGCgCGCGGccagccguuggaccaCCCCGCCCACa -3' miRNA: 3'- -GUCC-CCG-GUGCCaag------------GGGGUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 79057 | 0.69 | 0.413328 |
Target: 5'- -cGGGGCUGCGGgcCCagCCgGCCUACGa -3' miRNA: 3'- guCCCCGGUGCCaaGG--GGgUGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 134954 | 0.69 | 0.413328 |
Target: 5'- gCGGGGcGCCGCGG--CCaCCCAUgCCGCGu -3' miRNA: 3'- -GUCCC-CGGUGCCaaGG-GGGUG-GGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 1987 | 0.69 | 0.405123 |
Target: 5'- uCGGGGG-CGCGGUccagUUgCCCGCCCAgGc -3' miRNA: 3'- -GUCCCCgGUGCCA----AGgGGGUGGGUgC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 30851 | 0.69 | 0.405123 |
Target: 5'- gGGGGGacaCACGGUccgcgCCCUguCGCCCACc -3' miRNA: 3'- gUCCCCg--GUGCCAa----GGGG--GUGGGUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 150127 | 0.69 | 0.405123 |
Target: 5'- gAGGacgaGGCCGCGGggCCCgaguCCgACCCGCGc -3' miRNA: 3'- gUCC----CCGGUGCCaaGGG----GG-UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 503 | 0.69 | 0.405123 |
Target: 5'- cCGGGGGCUuccccCGccccUCCCCCcgcGCCCGCGg -3' miRNA: 3'- -GUCCCCGGu----GCca--AGGGGG---UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 150346 | 0.69 | 0.405123 |
Target: 5'- -cGGGGCgCGCGGUgcgCgUCCACCgGCa -3' miRNA: 3'- guCCCCG-GUGCCAa--GgGGGUGGgUGc -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 146420 | 0.69 | 0.404308 |
Target: 5'- -cGGGGCgagccgggcagagUGCGGagCCCCCggaGCCCGCGg -3' miRNA: 3'- guCCCCG-------------GUGCCaaGGGGG---UGGGUGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 92436 | 0.7 | 0.39702 |
Target: 5'- gGGGGGaCCGCGGUgUCCCUCaagcuuauGCCCuCGc -3' miRNA: 3'- gUCCCC-GGUGCCA-AGGGGG--------UGGGuGC- -5' |
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5492 | 3' | -63.2 | NC_001798.1 | + | 24717 | 0.7 | 0.39702 |
Target: 5'- -cGGGGcCCGCGGgcgcggcCgCCCCGCCgCACGc -3' miRNA: 3'- guCCCC-GGUGCCaa-----G-GGGGUGG-GUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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