miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 31873 0.67 0.566232
Target:  5'- aGGGGGCgGCGG----CCCGCCCcCGg -3'
miRNA:   3'- gUCCCCGgUGCCaaggGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 32027 0.66 0.613473
Target:  5'- uCGGGcgaccgcGGCCACGGgccgcUCgCCCCGgcgUCCGCGg -3'
miRNA:   3'- -GUCC-------CCGGUGCCa----AG-GGGGU---GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 32573 0.67 0.537757
Target:  5'- --cGGGCCGCGG--CCCCCGCguggagccgCCGCa -3'
miRNA:   3'- gucCCCGGUGCCaaGGGGGUG---------GGUGc -5'
5492 3' -63.2 NC_001798.1 + 33183 0.7 0.39702
Target:  5'- gGGGGGCgggCACGaGaagccgCCCCCACCCcCGa -3'
miRNA:   3'- gUCCCCG---GUGC-Caa----GGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 33823 0.67 0.519049
Target:  5'- aGGGGGCuCGCGcGUUCgCaacaCCACaCCACa -3'
miRNA:   3'- gUCCCCG-GUGC-CAAG-Gg---GGUG-GGUGc -5'
5492 3' -63.2 NC_001798.1 + 34109 0.67 0.566232
Target:  5'- uGGGGGCggugggcgUACGGg--CCCgACCCGCGc -3'
miRNA:   3'- gUCCCCG--------GUGCCaagGGGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 34808 0.74 0.209678
Target:  5'- -cGGGGCCcCGGggCCCCCGCgcuCCGCc -3'
miRNA:   3'- guCCCCGGuGCCaaGGGGGUG---GGUGc -5'
5492 3' -63.2 NC_001798.1 + 34883 0.66 0.604752
Target:  5'- cCGGGcGGCUAccCGGgaCCCCCGgCCGgGa -3'
miRNA:   3'- -GUCC-CCGGU--GCCaaGGGGGUgGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 40825 0.67 0.556692
Target:  5'- uGGGGGCCGCuGGUUCCgCguUUUugGg -3'
miRNA:   3'- gUCCCCGGUG-CCAAGGgGguGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 42633 0.66 0.584468
Target:  5'- aGGGGGCCgugggucguguccAUGGgguccgugUCCUCCuCCCACu -3'
miRNA:   3'- gUCCCCGG-------------UGCCa-------AGGGGGuGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 43335 0.69 0.430043
Target:  5'- gGGGGGCgGCaGUgCCgCCC-CCCGCGu -3'
miRNA:   3'- gUCCCCGgUGcCAaGG-GGGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 43518 0.66 0.595079
Target:  5'- gCAGGuaGGCgGCGGccgcgUCUCCCGCCaggGCGg -3'
miRNA:   3'- -GUCC--CCGgUGCCa----AGGGGGUGGg--UGC- -5'
5492 3' -63.2 NC_001798.1 + 47861 0.71 0.320557
Target:  5'- cCGGGGGCCccgugggcgccgGCGGgcgcucgcacgCCCCUcCCCGCGg -3'
miRNA:   3'- -GUCCCCGG------------UGCCaa---------GGGGGuGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 48382 0.74 0.226946
Target:  5'- -cGGGGCgugccgccgcgaccgCACGGg-CCCCCGCCCGCu -3'
miRNA:   3'- guCCCCG---------------GUGCCaaGGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 50273 0.68 0.500604
Target:  5'- uGGGGGaCGUGGagUCCCCCuccccgggaaugACCCACGa -3'
miRNA:   3'- gUCCCCgGUGCCa-AGGGGG------------UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 51965 0.81 0.07665
Target:  5'- gAGGGGCCGCGcc-CCCCCACCC-CGg -3'
miRNA:   3'- gUCCCCGGUGCcaaGGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 54658 0.67 0.519049
Target:  5'- gCAGcGGccggcaGCCGCGGcgCgCCCGCUCGCGg -3'
miRNA:   3'- -GUC-CC------CGGUGCCaaGgGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 57573 0.7 0.373348
Target:  5'- aGGGGGCgGCauugcucgcGUUCCCCCgcggGCCCACc -3'
miRNA:   3'- gUCCCCGgUGc--------CAAGGGGG----UGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 58930 0.75 0.173476
Target:  5'- --aGGGCCACGGccgcUCCCCCGCCgACc -3'
miRNA:   3'- gucCCCGGUGCCa---AGGGGGUGGgUGc -5'
5492 3' -63.2 NC_001798.1 + 59831 0.67 0.547198
Target:  5'- uGGGGcGCCGCGGUcgCCCgCGuCCgGCu -3'
miRNA:   3'- gUCCC-CGGUGCCAa-GGGgGU-GGgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.