miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 122835 0.67 0.559549
Target:  5'- uCGGGGGCgGCGGcggcggcucgucccUCucagcgacgacauCCCCGCCCGCu -3'
miRNA:   3'- -GUCCCCGgUGCCa-------------AG-------------GGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 121696 0.8 0.086979
Target:  5'- uGGGGGCCGCGGcUCCCgCCGCCgCgACGg -3'
miRNA:   3'- gUCCCCGGUGCCaAGGG-GGUGG-G-UGC- -5'
5492 3' -63.2 NC_001798.1 + 121075 0.67 0.516264
Target:  5'- --cGGGCCccgaggacgcgcacACGcacCCCCCACCCACGc -3'
miRNA:   3'- gucCCCGG--------------UGCcaaGGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 117038 0.68 0.473498
Target:  5'- uGGGGGCCAacuacuucUCCUCCAUCCGCc -3'
miRNA:   3'- gUCCCCGGUgcca----AGGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 115319 0.66 0.595079
Target:  5'- -cGGGGaCC-UGGUgcccgCCCCCGgCCACc -3'
miRNA:   3'- guCCCC-GGuGCCAa----GGGGGUgGGUGc -5'
5492 3' -63.2 NC_001798.1 + 111594 0.68 0.49149
Target:  5'- gGGGGGCCcgGCGGggcggCCUCCuggaGCCC-CGg -3'
miRNA:   3'- gUCCCCGG--UGCCaa---GGGGG----UGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 107429 0.7 0.381131
Target:  5'- aCGGGGgucGCCGCGGcgaCCCCgCGCCC-CGa -3'
miRNA:   3'- -GUCCC---CGGUGCCaa-GGGG-GUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 106744 0.68 0.470827
Target:  5'- aGGGGGCCucCGGagCCCgcggggauccggagCUGCCCACGc -3'
miRNA:   3'- gUCCCCGGu-GCCaaGGG--------------GGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 105197 0.67 0.537757
Target:  5'- -cGGGGcCCGCGGUgggcgacggcgcUgCCCCGUCCGCa -3'
miRNA:   3'- guCCCC-GGUGCCA------------AgGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 102064 0.67 0.528372
Target:  5'- uGGGGGUgGUGGUagggCCCCACCgGCGg -3'
miRNA:   3'- gUCCCCGgUGCCAag--GGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 101496 0.71 0.307592
Target:  5'- uGGGGGCCAuCGGUUcggcuccuagcccCCCCCcCUCACc -3'
miRNA:   3'- gUCCCCGGU-GCCAA-------------GGGGGuGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 98492 0.67 0.537757
Target:  5'- cUAGcGGGCgGCGGgagcgacgcgCCCCCguagGCCCGCc -3'
miRNA:   3'- -GUC-CCCGgUGCCaa--------GGGGG----UGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 96995 0.75 0.177676
Target:  5'- -cGGGGCCAgGGccggCCCgCCGCCCGCc -3'
miRNA:   3'- guCCCCGGUgCCaa--GGG-GGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 96185 0.7 0.39702
Target:  5'- ---cGGCCGCGGUUUCCgaGCCCACu -3'
miRNA:   3'- guccCCGGUGCCAAGGGggUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 93500 0.69 0.447149
Target:  5'- gAGGGGCgcccCACGGcgCCCCUcgucggcggaACCCAgGa -3'
miRNA:   3'- gUCCCCG----GUGCCaaGGGGG----------UGGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 92436 0.7 0.39702
Target:  5'- gGGGGGaCCGCGGUgUCCCUCaagcuuauGCCCuCGc -3'
miRNA:   3'- gUCCCC-GGUGCCA-AGGGGG--------UGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 92034 0.73 0.244843
Target:  5'- cCAGGGGCCGCucggcgaacgggcgGGUguagaCCCCACCCccaGCGc -3'
miRNA:   3'- -GUCCCCGGUG--------------CCAag---GGGGUGGG---UGC- -5'
5492 3' -63.2 NC_001798.1 + 91777 0.67 0.537757
Target:  5'- aGGGcGGCCACGc--CCCCUGCCgAUGa -3'
miRNA:   3'- gUCC-CCGGUGCcaaGGGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 91579 0.66 0.614443
Target:  5'- gGGGGcGCCGCGGUUUcuuuuuaucggCCCgGCaggCCGCGc -3'
miRNA:   3'- gUCCC-CGGUGCCAAG-----------GGGgUG---GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 86088 0.69 0.433434
Target:  5'- uCGGGGccccggcugcgcgccGCCGCGGacgCCCgCCGCgCCGCGg -3'
miRNA:   3'- -GUCCC---------------CGGUGCCaa-GGG-GGUG-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.