miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 85933 0.68 0.507027
Target:  5'- gCGGGGGCggagacagcugcugCACGcGcgCCgCCGCCCGCa -3'
miRNA:   3'- -GUCCCCG--------------GUGC-CaaGGgGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 85293 0.76 0.150089
Target:  5'- gCGGGGGCCGgGGUccgCCcgcggCCCGCCCGCa -3'
miRNA:   3'- -GUCCCCGGUgCCAa--GG-----GGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 84868 0.66 0.618323
Target:  5'- gCGGGGGUCauguccucgaaccagACGGccgcgUCCCCCGCgCCGu- -3'
miRNA:   3'- -GUCCCCGG---------------UGCCa----AGGGGGUG-GGUgc -5'
5492 3' -63.2 NC_001798.1 + 84550 0.68 0.509791
Target:  5'- cCGGGcaaGGgUGCGcGUUCCCCCACCCcCu -3'
miRNA:   3'- -GUCC---CCgGUGC-CAAGGGGGUGGGuGc -5'
5492 3' -63.2 NC_001798.1 + 84508 0.66 0.575813
Target:  5'- cCGGGcGGCCGCcguagGGcUUCCCCAucCCCGCc -3'
miRNA:   3'- -GUCC-CCGGUG-----CCaAGGGGGU--GGGUGc -5'
5492 3' -63.2 NC_001798.1 + 84422 0.69 0.447149
Target:  5'- gUAGGGGCC-CGac-UCCCCACCCcCGc -3'
miRNA:   3'- -GUCCCCGGuGCcaaGGGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 82316 0.68 0.473498
Target:  5'- -cGGaGGCC-CGGUUgcccgccgcCCCCCACCC-Ca -3'
miRNA:   3'- guCC-CCGGuGCCAA---------GGGGGUGGGuGc -5'
5492 3' -63.2 NC_001798.1 + 82068 0.66 0.614443
Target:  5'- -cGGGGCCccGCGGccggCCCACCC-CGg -3'
miRNA:   3'- guCCCCGG--UGCCaaggGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 79057 0.69 0.413328
Target:  5'- -cGGGGCUGCGGgcCCagCCgGCCUACGa -3'
miRNA:   3'- guCCCCGGUGCCaaGG--GGgUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 78975 0.67 0.528372
Target:  5'- gGGGGcGCCugGaagUCCCCCGagggguUCCGCGc -3'
miRNA:   3'- gUCCC-CGGugCca-AGGGGGU------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 77853 0.66 0.613473
Target:  5'- gCAGGcgcucgcGGCCaacgccgagGCGGUcaCCCUCGCCCugGa -3'
miRNA:   3'- -GUCC-------CCGG---------UGCCAa-GGGGGUGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 76603 0.66 0.614443
Target:  5'- aCGGGGGCg--GGcugUCCCCCGaggCCACGc -3'
miRNA:   3'- -GUCCCCGgugCCa--AGGGGGUg--GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 74661 0.68 0.464626
Target:  5'- gGGGGGCCuCGGg---CCCACCCgACa -3'
miRNA:   3'- gUCCCCGGuGCCaaggGGGUGGG-UGc -5'
5492 3' -63.2 NC_001798.1 + 74583 0.7 0.381131
Target:  5'- --cGGGCC-CGGUcguccccgcgcUCCCCgCGCCCACc -3'
miRNA:   3'- gucCCCGGuGCCA-----------AGGGG-GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 73265 0.68 0.500604
Target:  5'- -uGGaGGCCcaagaugccgGCGGUagcaCCCCCgaACCCACGa -3'
miRNA:   3'- guCC-CCGG----------UGCCAa---GGGGG--UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 71409 0.72 0.276019
Target:  5'- gCGGGGGUgcccgCGCGGacgcCCCCCGgCCACGg -3'
miRNA:   3'- -GUCCCCG-----GUGCCaa--GGGGGUgGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 69848 0.67 0.537757
Target:  5'- --cGGGCCGCcgucGGccgCCCCCcCCCACa -3'
miRNA:   3'- gucCCCGGUG----CCaa-GGGGGuGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 66628 0.68 0.500604
Target:  5'- --cGGGCuCGCGGUcgacggcgUCCCCCAgaaaCCGCGc -3'
miRNA:   3'- gucCCCG-GUGCCA--------AGGGGGUg---GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 62826 0.74 0.224853
Target:  5'- -uGGGcCCACGcg-CCCCCGCCCGCGu -3'
miRNA:   3'- guCCCcGGUGCcaaGGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 61689 0.66 0.614443
Target:  5'- -cGGGGCCAaGGcgaUCCUgGCCCGCa -3'
miRNA:   3'- guCCCCGGUgCCaa-GGGGgUGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.