miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 102064 0.67 0.528372
Target:  5'- uGGGGGUgGUGGUagggCCCCACCgGCGg -3'
miRNA:   3'- gUCCCCGgUGCCAag--GGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 78975 0.67 0.528372
Target:  5'- gGGGGcGCCugGaagUCCCCCGagggguUCCGCGc -3'
miRNA:   3'- gUCCC-CGGugCca-AGGGGGU------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 136002 0.67 0.519049
Target:  5'- cCGGGGGCgGggaguCGGUcggcgUCCCCguggaucugUACCCGCGg -3'
miRNA:   3'- -GUCCCCGgU-----GCCA-----AGGGG---------GUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 33823 0.67 0.519049
Target:  5'- aGGGGGCuCGCGcGUUCgCaacaCCACaCCACa -3'
miRNA:   3'- gUCCCCG-GUGC-CAAG-Gg---GGUG-GGUGc -5'
5492 3' -63.2 NC_001798.1 + 147912 0.67 0.519049
Target:  5'- gGGGGGCaggCGCGGgucgggCCCguaCGCCCACc -3'
miRNA:   3'- gUCCCCG---GUGCCaa----GGGg--GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 54658 0.67 0.519049
Target:  5'- gCAGcGGccggcaGCCGCGGcgCgCCCGCUCGCGg -3'
miRNA:   3'- -GUC-CC------CGGUGCCaaGgGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 7444 0.67 0.519049
Target:  5'- cCAGGGaGCCuagacccccACGGgaaCCCCgcgcaACCCGCGg -3'
miRNA:   3'- -GUCCC-CGG---------UGCCaagGGGG-----UGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 105197 0.67 0.537757
Target:  5'- -cGGGGcCCGCGGUgggcgacggcgcUgCCCCGUCCGCa -3'
miRNA:   3'- guCCCC-GGUGCCA------------AgGGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 153684 0.67 0.537757
Target:  5'- -cGGGGaCGCGGgggCCgCCGCCgGCGc -3'
miRNA:   3'- guCCCCgGUGCCaa-GGgGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 32573 0.67 0.537757
Target:  5'- --cGGGCCGCGG--CCCCCGCguggagccgCCGCa -3'
miRNA:   3'- gucCCCGGUGCCaaGGGGGUG---------GGUGc -5'
5492 3' -63.2 NC_001798.1 + 24460 0.67 0.566232
Target:  5'- -cGGcGCCGCGGgggugCUCgCCGCCCugGg -3'
miRNA:   3'- guCCcCGGUGCCaa---GGG-GGUGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 122835 0.67 0.559549
Target:  5'- uCGGGGGCgGCGGcggcggcucgucccUCucagcgacgacauCCCCGCCCGCu -3'
miRNA:   3'- -GUCCCCGgUGCCa-------------AG-------------GGGGUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 140016 0.67 0.556692
Target:  5'- --uGGGCCAgGGUgCCCUCACgCGCc -3'
miRNA:   3'- gucCCCGGUgCCAaGGGGGUGgGUGc -5'
5492 3' -63.2 NC_001798.1 + 40825 0.67 0.556692
Target:  5'- uGGGGGCCGCuGGUUCCgCguUUUugGg -3'
miRNA:   3'- gUCCCCGGUG-CCAAGGgGguGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 5586 0.67 0.547198
Target:  5'- aAGGGGCCgGCGaGgUCgCCCCGuuggUCCGCGg -3'
miRNA:   3'- gUCCCCGG-UGC-CaAG-GGGGU----GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 30181 0.67 0.547198
Target:  5'- aCGGGGGaCACGGcgCgggggUCCCGCCuCACGc -3'
miRNA:   3'- -GUCCCCgGUGCCaaG-----GGGGUGG-GUGC- -5'
5492 3' -63.2 NC_001798.1 + 1484 0.67 0.547198
Target:  5'- -cGGGcGCCAUGGcgUCgCCCgCGCCCgagGCGg -3'
miRNA:   3'- guCCC-CGGUGCCa-AG-GGG-GUGGG---UGC- -5'
5492 3' -63.2 NC_001798.1 + 59831 0.67 0.547198
Target:  5'- uGGGGcGCCGCGGUcgCCCgCGuCCgGCu -3'
miRNA:   3'- gUCCC-CGGUGCCAa-GGGgGU-GGgUGc -5'
5492 3' -63.2 NC_001798.1 + 150675 0.67 0.537757
Target:  5'- ----cGCCGCGGcgucUUCgCCCACCCGCGc -3'
miRNA:   3'- gucccCGGUGCC----AAGgGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 69848 0.67 0.537757
Target:  5'- --cGGGCCGCcgucGGccgCCCCCcCCCACa -3'
miRNA:   3'- gucCCCGGUG----CCaa-GGGGGuGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.