Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 122103 | 0.66 | 0.843432 |
|
Target: 5'- aGCCGCCCgGCGGG-GGgcgcuuugccAGCCGGg- -3' miRNA: 3'- -UGGUGGG-UGUCCaCCaua-------UCGGCCac -5' |
|||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 122223 | 0.66 | 0.868203 |
|
Target: 5'- gGCUggaCCGCGGGUGGgaagcucUGGCCGGc- -3' miRNA: 3'- -UGGug-GGUGUCCACCau-----AUCGGCCac -5' |
|||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 135206 | 0.68 | 0.765997 |
|
Target: 5'- gGCCGCCCucGCGGGccucgGGga-GGCCGGg- -3' miRNA: 3'- -UGGUGGG--UGUCCa----CCauaUCGGCCac -5' |
|||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 138194 | 0.66 | 0.845039 |
|
Target: 5'- uGCCGCCCuugccgaaccCAGGgagGGUGUGGUCGa-- -3' miRNA: 3'- -UGGUGGGu---------GUCCa--CCAUAUCGGCcac -5' |
|||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 140123 | 0.68 | 0.756506 |
|
Target: 5'- cACCuACUCACGaccGUGGUGUAuuGCUGGUGg -3' miRNA: 3'- -UGG-UGGGUGUc--CACCAUAU--CGGCCAC- -5' |
|||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 146013 | 0.67 | 0.826099 |
|
Target: 5'- cGCCACCCcccaaacagccaagGCGcGGUGGgg-GGCgUGGUGg -3' miRNA: 3'- -UGGUGGG--------------UGU-CCACCauaUCG-GCCAC- -5' |
|||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 148670 | 0.66 | 0.860685 |
|
Target: 5'- cACCACCCcCAG--GGUcUGGCCGGc- -3' miRNA: 3'- -UGGUGGGuGUCcaCCAuAUCGGCCac -5' |
|||||||
| 5493 | 3' | -57 | NC_001798.1 | + | 152061 | 0.67 | 0.834454 |
|
Target: 5'- cACgGCCCACGGG-GGUcccccgaccgcuuaAgcgGGCCGGg- -3' miRNA: 3'- -UGgUGGGUGUCCaCCA--------------Ua--UCGGCCac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home